Job Description P0C0U4 Confidence 100.00% Date Thu Jan 5 11:30:01 GMT 2012 Rank 17 Aligned Residues 273 % Identity 19% Template c3tqtB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii Resolution 1.88 Å

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		1	.	.	.	.	.	.	.	.	10	.	.							.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																										.	.	.	40	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	A	I	L	S	R	D	G	T	L	.	.	.	.	.	.	Y	S	C	K	R	L	R	E	A	A	I	Q	R	G	H	L	V	E	I	L	D	P	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	Y	M	N	I	N	P	A	A	S	S	I	H
Query Conservation														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	H	I	S	V	L	C	G	G	Q	S	T	E	H	E	I	S	I	Q	S	A	K	N	I	V	N	T	L	D	A	A	K	Y	L	I	S	V	I	F	I	D	H	V	G	R	W	Y	L	I	D	Q	P	E	M	F	L	A	H	S	P	D	H	L	V	K	E	G	S	A	R	P	I	T	I	A	F	K	P	W	Q
Template Known Secondary structure											S	S	T	T															S		T	T	T										T	T	S														S									T		S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																																									.																																						.	.	.
Query SS confidence																																									.																																						.	.	.
Query Sequence		Y	K	G	R	K	L	P	H	F	D	A	V	I	P	R	I	G	T	A	I	T	F	Y	G	T	A	A	L	R	Q	F	E	M	L	G	S	Y	P	L	.	N	E	S	V	A	I	A	R	A	R	D	K	L	R	S	M	Q	L	L	A	R	Q	G	I	D	L	P	V	T	G	I	A	H	S	P	D	D	.	.	.
Query Conservation																																									.																																						.	.	.
Alig confidence																								.																	.																																						.	.	.
Template Conservation																								.
Template Sequence		S	L	D	G	R	R	Y	S	A	D	C	V	F	P	M	V	H	G	T	Q	G	E	.	D	G	A	L	Q	G	L	L	E	L	L	N	L	P	Y	V	G	A	N	V	Q	S	S	A	V	C	M	E	K	D	L	T	K	T	V	L	R	A	G	G	I	P	V	V	D	W	H	T	L	S	P	R	D	A	T	E	G
Template Known Secondary structure											S								S	T	T	T	T	.	S	S									T	T			B	S	S											S											T	T			B								T	T	S			T	T
Template Predicted Secondary structure																								.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
			126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	T	S	D	L	I	D	M	V	G	G	A	P	L	V	V	K	L	V	E	G	T	Q	G	I	G	V	V	L	A	E	T	R	Q	A	A	E	S	V	I	D	A	F	R	G	L	N	A	H	I	L	V	Q	E	Y	I	K	E	A	Q	G	C	D	I	R	C	L	V	V	G	D	E	V	V	A	A	I	E	R	R
Query Conservation		.
Alig confidence		.																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	Q	R	L	L	D	R	W	G	T	S	E	L	F	V	K	A	V	S	L	G	S	S	V	A	T	L	P	V	K	T	E	T	E	F	T	K	A	V	K	E	V	F	R	Y	D	D	R	L	M	V	E	P	R	I	R	G	R	E	I	E	C	A	V	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S		S							S	S			S	G	G	G						S												T	T	T		S										S										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.							.	.	.	.	.
Predicted Secondary structure																																								.														.																	.	.	.	.	.	.
Query SS confidence																																								.														.																	.	.	.	.	.	.
Query Sequence		A	K	E	G	D	F	R	S	N	L	H	R	G	G	A	A	S	V	A	S	I	T	P	Q	E	R	E	I	A	I	K	A	A	R	T	M	A	L	.	D	V	A	G	V	D	I	L	R	A	N	R	G	.	P	L	V	M	E	V	N	A	S	P	G	L	E	G	I	E	.	.	.	.	.	.	K	T	T	G	I
Query Conservation																																								.														.																	.	.	.	.	.	.
Alig confidence																																								.														.																	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	A	P	K	A	S	L	P	G	E	I	I	T	T	T	T	S	E	S	V	T	K	Q	I	Q	Q	I	A	I	D	A	F	K	M	V	H	C	S	G	M	A	R	V	D	F	F	V	T	P	N	N	K	V	L	V	N	E	I	N	T	I	P	G	F	T	N	I	S	M	Y	P	K	M	W	E	A	S	G	L
Template Known Secondary structure		S	S	S																																	T	T													T	T										S	S				S	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	A	G	K	M	I	R	W	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	C	P	N	L	L	D	Q	L	I	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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