Job Description P0C0U4 Confidence 99.97% Date Thu Jan 5 11:30:01 GMT 2012 Rank 31 Aligned Residues 271 % Identity 15% Template c3r23B_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine--d-alanine ligase from bacillus2 anthracis Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10							.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.
Query Sequence		K	I	A	I	L	S	R	D	G	.	.	.	.	.	.	T	L	Y	S	C	K	R	L	R	E	A	A	I	Q	R	G	H	L	V	E	I	L	D	P	L	S	C	Y	M	N	I	N	P	A	A	S	S	I	H	Y	K	G	R	K	L	P	H	F	D	A	V	I	P	R	I	G	T	A	I	T	F	Y	G	T	A
Query Conservation											.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		R	I	G	V	I	X	G	G	V	S	S	E	K	Q	V	S	I	X	T	G	N	E	X	I	A	N	L	D	K	N	K	Y	E	I	V	P	I	T	L	N	E	K	X	D	L	.	.	.	.	.	.	.	.	.	.	.	I	E	K	A	K	D	I	D	F	A	L	L	A	L	H	G	K	Y	G	E	D	.	G	T
Template Known Secondary structure										S																		S		T	T	T									S	S	G	G	G		.	.	.	.	.	.	.	.	.	.	.				G	G	G		S								S					S	.	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.												.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		A	L	R	Q	F	E	M	L	G	S	Y	P	L	.	N	E	S	V	A	I	A	R	A	R	D	K	L	R	S	M	Q	L	L	A	R	Q	G	I	D	L	P	V	T	G	I	A	H	S	P	D	D	T	S	D	L	I	D	M	V	G	G	A	P	L	V	V	K	L	V	E	G	T	Q	G	I	G	V	V	L	A
Query Conservation															.
Alig confidence															.																																																																.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		V	Q	G	T	L	E	S	L	G	I	P	Y	S	G	S	N	X	L	S	S	G	I	C	X	D	K	N	I	S	K	K	I	L	R	Y	E	G	I	E	T	P	D	W	I	E	L	T	K	X	E	D	L	N	F	D	E	L	D	K	L	G	F	P	L	V	V	K	P	N	S	G	G	V	K	I	V	Y	.	.	.
Template Known Secondary structure									T	T			B	S	S	S																					T	T											S	S	S								T	T	T		S	S						S									.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																					.	.	.	.
Query SS confidence																																																					.	.	.	.
Query Sequence		E	T	R	Q	A	A	E	S	V	I	D	A	F	R	G	L	N	A	H	I	L	V	Q	E	Y	I	K	E	A	Q	G	C	D	I	R	C	L	V	V	G	D	E	V	V	A	A	I	E	R	R	A	.	.	.	.	K	E	G	D	F	R	S	N	L	H	R	G	G	A	A	S	V	A	S	I	T	P	Q	E	R
Query Conservation																																																					.	.	.	.
Alig confidence		.																																																			.	.	.	.
Template Conservation		.
Template Sequence		.	D	K	D	E	L	I	S	X	L	E	T	V	F	E	W	D	S	E	V	V	I	E	K	Y	I	K	G	E	E	I	T	C	S	I	F	D	G	K	Q	L	P	I	I	S	I	R	H	A	A	E	F	F	D	Y	N	A	K	Y	D	D	A	S	T	I	E	E	V	I	E	L	P	A	E	L	K	E	R	V	N
Template Known Secondary structure		.	S	T	T														S										S									T	T																T	T	T	T				S
Template Predicted Secondary structure		.
Template SS confidence
			151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.							.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure														.																									.	.	.	.	.	.
Query SS confidence														.																									.	.	.	.	.	.
Query Sequence		E	I	A	I	K	A	A	R	T	M	A	L	.	D	V	A	G	V	D	I	L	R	A	N	R	G	P	L	V	M	E	V	N	A	S	P	G	.	.	.	.	.	.	L	E	G	I	E	K	T	T	G	I	D	I	A	G	K	M	I	R	W	I	E	R
Query Conservation														.																									.	.	.	.	.	.
Alig confidence														.																									.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	S	L	A	C	Y	K	A	L	K	C	S	V	Y	A	R	V	D	X	X	V	K	D	G	I	P	Y	V	X	E	V	N	T	L	P	G	X	T	Q	A	S	L	L	P	K	S	A	D	A	A	G	I	H	Y	S	K	L	L	D	X	I	I	E	T
Template Known Secondary structure											T	T			S										T	T									S	S				S	T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions