Job Description P0C0U4 Confidence 99.96% Date Thu Jan 5 11:30:01 GMT 2012 Rank 43 Aligned Residues 274 % Identity 13% Template c3k3pA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of the apo form of d-alanine:d-alanine ligase (ddl)2 from streptococcus mutans Resolution 2.23 Å

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		2	.	.	.	.	.	.	.	10	.							.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																		.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	A	I	L	S	R	D	G	T	.	.	.	.	.	.	L	Y	S	C	K	R	L	R	E	A	A	I	Q	R	G	H	L	V	E	I	L	D	P	L	S	C	Y	M	N	I	N	P	A	A	S	S	I	H	Y	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	L	P	H	F
Query Conservation												.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	V	L	L	Y	G	G	R	S	A	E	R	D	V	S	V	L	S	A	E	S	V	M	R	A	I	N	Y	D	N	F	L	V	K	T	Y	F	I	T	Q	A	G	D	F	I	K	T	Q	E	F	D	S	Q	P	S	D	K	L	M	T	N	D	T	I	I	A	S	Q	K	I	K	P	S	D	I	Y	E	E	E
Template Known Secondary structure										S	S	T	T															S		T	T	T										T	T	S									S	S									T	T	S			G	G	G				G	G	G	G			T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		D	A	V	I	P	R	I	G	T	A	I	T	F	Y	G	T	A	A	L	R	Q	F	E	M	L	G	S	Y	P	L	N	E	S	V	A	I	A	R	A	R	D	K	L	R	S	M	Q	L	L	A	R	Q	.	G	I	D	L	P	V	T	G	I	A	H	S	P	D	D	T	S	D	L	I	D	M	V	G	G	A	P
Query Conservation																																																						.
Alig confidence																																																						.																							.	.	.
Template Conservation																																																																													.	.	.
Template Sequence		A	V	V	F	P	V	L	H	G	P	M	G	E	D	G	S	I	Q	G	F	L	E	V	L	K	M	P	Y	V	G	T	N	I	L	S	S	S	V	A	M	D	K	I	T	T	N	Q	V	L	E	S	A	T	T	I	P	Q	V	A	Y	V	A	L	I	E	G	E	P	L	E	S	K	L	A	E	.	.	.	V	E
Template Known Secondary structure										S	T	T	T	S	S	S									T	T			B	S	S																											B								T	T	S									.	.	.
Template Predicted Secondary structure																																																																													.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	V	K	L	V	E	G	T	Q	G	I	G	V	V	L	A	E	T	R	Q	A	A	E	S	V	I	D	A	F	R	G	L	N	A	H	I	L	V	Q	E	Y	I	K	E	A	Q	G	C	D	I	R	C	L	V	V	G	D	E	V	V	A	A	I	E	R	R	A	K	E	G	D	F	R	S	N	L	H	R	G
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.
Template Sequence		E	K	L	I	Y	P	V	F	V	K	P	A	N	I	S	K	A	E	N	R	T	D	L	K	Q	A	I	A	L	A	L	K	Y	D	S	R	V	L	I	E	Q	G	V	D	A	R	E	I	E	V	G	I	L	G	N	T	D	V	K	T	T	L	P	G	E	I	.	.	.	.	.	.	.	.	.	V	T	M	A	I
Template Known Secondary structure						S	S												S	S																S										S										S	S	S										.	.	.	.	.	.	.	.	.					S
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.										230	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																											.														.													.	.	.	.
Query SS confidence																											.														.													.	.	.	.
Query Sequence		G	A	A	S	V	A	S	I	T	P	Q	E	R	E	I	A	I	K	A	A	R	T	M	A	L	.	D	V	A	G	V	D	I	L	R	A	N	R	G	.	P	L	V	M	E	V	N	A	S	P	G	L	.	.	.	.	E	G	I	E	K	T	T	G	I	D	I	A	G	K	M	I	R	W	I	E
Query Conservation																											.														.													.	.	.	.
Alig confidence																											.														.													.	.	.	.
Template Conservation
Template Sequence		P	A	E	I	D	P	V	I	V	E	K	M	R	D	Y	A	A	T	A	F	R	T	L	G	C	C	G	L	S	R	C	D	F	F	L	T	E	D	G	K	V	Y	L	N	E	L	N	T	M	P	G	F	T	S	M	Y	P	L	L	W	E	N	M	G	L	S	Y	S	V	L	I	E	E	L	V	S
Template Known Secondary structure		S																						T	T													T	T										S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions