Job Description P0C0U4 Confidence 100.00% Date Thu Jan 5 11:30:01 GMT 2012 Rank 7 Aligned Residues 292 % Identity 17% Template c3i12A_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10							.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	A	I	L	S	R	D	G	.	.	.	.	.	.	T	L	Y	S	C	K	R	L	R	E	A	A	I	Q	R	G	H	L	V	E	I	L	D	P	L	S	C	Y	M	N	I	N	P	A	A	S	S	I	H	Y	K	G	R	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	V	G	I	V	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	K	N	I	V	D	A	I	D	K	T	R	F	D	V	V	L	L	G	I	D	K	A	G	Q	W	H	V	N	D	A	E	N	Y	L	Q	N	A	D	D	P	A	H	I	A	L	R	P	S	A	I	S	L	A	Q	V	P	G	K	H
Template Known Secondary structure											S	S	T	T															S		T	T	T										T	T	S							S	S	S	S	B	S	S	T	T		T	T	T			B				S		B					T	T		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
														55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	P	H	F	D	A	V	I	P	R	I	G	T	A	I	T	F	Y	G	T	A	A	L	R	Q	F	E	M	L	G	S	Y	P	L	.	N	E	S	V	A	I	A	R	A	R	D	K	L	R	S	M	Q	L	L	A	R	Q	G	I	D	L	P	V	T	G	I	A	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																			.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																				.															.
Template Conservation																																	.
Template Sequence		Q	H	Q	L	I	N	A	Q	N	G	Q	P	L	P	T	V	D	V	I	F	P	I	V	H	G	T	L	G	E	D	G	.	S	L	Q	G	M	L	R	V	A	N	L	P	F	V	G	S	D	V	L	S	S	A	A	C	M	D	K	D	V	A	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T
Template Known Secondary structure		S	S					T	T	T			B					S								S	T	T	T	T	S	S	.									T	T			B	S	S																						T	T			B
Template Predicted Secondary structure																																	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		S	P	D	D	T	S	D	L	I	D	M	V	G	.	.	.	G	A	P	L	V	V	K	L	V	E	G	T	Q	G	I	G	V	V	L	A	E	T	R	Q	A	A	E	S	V	I	D	A	F	R	G	L	N	A	H	I	L	V	Q	E	Y	I	K	E	A	Q	G	C	D	I	R	C	L	V	V	G	D	E	V	V
Query Conservation															.	.	.
Alig confidence															.	.	.
Template Conservation
Template Sequence		R	T	N	R	H	A	F	S	F	A	E	V	E	S	R	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	A	N	E	A	Q	Y	Q	Q	A	V	A	L	A	F	E	F	D	H	K	V	V	V	E	Q	G	I	K	G	R	E	I	E	C	A	V	L	G	N	D	N	P	Q	A	S
Template Known Secondary structure		T	T	T	G	G	G												S	S						T	T			T	T	T	T					S	S																S										S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		199	200	.	.	.	.	.	.	.	.	.	210								.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.																																	.														.												.	.	.
Query SS confidence														.	.	.	.	.	.	.																																	.														.												.	.	.
Query Sequence		A	A	I	E	R	R	A	K	E	G	D	F	.	.	.	.	.	.	.	R	S	N	L	H	R	G	G	A	A	S	V	A	S	I	T	P	Q	E	R	E	I	A	I	K	A	A	R	T	M	A	L	.	D	V	A	G	V	D	I	L	R	A	N	R	G	.	P	L	V	M	E	V	N	A	S	P	G	.	.	.
Query Conservation														.	.	.	.	.	.	.																																	.														.												.	.	.
Alig confidence														.	.	.	.	.	.	.																																	.														.												.	.	.
Template Conservation
Template Sequence		T	C	G	E	I	V	L	N	S	E	F	Y	D	T	K	Y	I	D	D	N	G	A	Q	V	V	V	P	A	Q	I	P	S	E	V	N	D	K	I	R	A	I	A	I	Q	A	Y	Q	T	L	G	C	A	G	M	A	R	V	D	V	F	L	T	A	D	N	E	V	V	I	N	E	I	N	T	L	P	G	F	T	N
Template Known Secondary structure										T	T			T	T	T	T	S	G	G	G	G					S	S		S	S																			T	T													T	T										S	S				S	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
					267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	L	E	G	I	E	K	T	T	G	I	D	I	A	G	K	M	I	R	W	I	E	R	H	A	T	T	E
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		I	S	M	Y	P	K	L	W	Q	A	S	G	L	G	Y	T	D	L	I	S	R	L	I	E	L	A	L	E	R	H
Template Known Secondary structure		T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions