Job Description P0C0U4 Confidence 76.73% Date Thu Jan 5 11:30:01 GMT 2012 Rank 200 Aligned Residues 82 % Identity 12% Template c2zkiH_ PDB info PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																.	.	.																																								.	.	.	.	.	.	.
Query SS confidence																.	.	.																																								.	.	.	.	.	.	.
Query Sequence		M	K	I	A	I	L	S	R	D	G	T	L	Y	S	.	.	.	C	K	R	L	R	E	A	A	I	Q	R	G	H	L	V	E	I	L	D	P	L	S	C	Y	M	N	I	N	P	A	A	S	S	I	H	Y	K	G	R	.	.	.	.	.	.	.	K	L	P	H	F	D	A	V	I	P	R	I	G	T	A	I	T
Query Conservation																.	.	.																																								.	.	.	.	.	.	.
Alig confidence											.					.	.	.																																								.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		P	N	I	L	V	L	F	Y	G	.	Y	G	S	I	V	E	L	A	K	E	I	G	K	G	A	E	E	A	G	A	E	V	K	I	R	R	V	R	E	T	L	P	P	E	F	Q	S	R	I	P	F	D	K	V	K	D	I	P	E	V	T	L	D	D	M	R	W	A	D	G	F	A	I	G	S	P	T	R	Y	G
Template Known Secondary structure											.	S	S																	T												S		G	G	G		T	T			G	G	G	S	T	T	S		B										S									B	T	T
Template Predicted Secondary structure											.
Template SS confidence
		5	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	G	T	A	A	L	R	Q	F	E	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	M	A	G	G	L	K	T	F	L	D	T	T
Template Known Secondary structure		B											T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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