Job Description P0C0U4 Confidence 100.00% Date Thu Jan 5 11:30:01 GMT 2012 Rank 21 Aligned Residues 283 % Identity 17% Template c2zdqA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine:d-alanine ligase with atp2 and d-alanine:d-alanine from thermus thermophius hb8 Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.							.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.											40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	A	I	L	S	R	D	G	T	L	.	.	.	.	.	.	Y	S	C	K	R	L	R	E	A	A	I	Q	R	G	H	L	V	E	I	L	D	P	L	S	C	Y	M	.	.	.	.	.	.	.	.	.	.	N	I	N	P	A	A	S	S	I	H	Y	K	G	R	K	L	P	H	F	D	A	V	I	P	R
Query Conservation														.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	R	V	L	L	I	A	G	G	V	S	P	E	H	E	V	S	L	L	S	A	E	G	V	L	R	H	I	P	F	P	T	D	L	A	V	I	A	Q	D	G	R	W	L	L	G	E	K	A	L	T	A	L	E	A	K	A	A	P	E	G	E	H	P	F	P	P	P	L	S	W	E	R	Y	D	V	V	F	P	L
Template Known Secondary structure											S	S	T	T																S	S									T	T	S					T									T	S						S	B		S	S					G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		I	G	T	A	I	T	F	Y	G	T	A	A	L	R	Q	F	E	M	L	G	S	Y	P	L	.	N	E	S	V	A	I	A	R	A	R	D	K	L	R	S	M	Q	L	L	A	R	Q	G	I	D	L	P	V	T	G	I	A	H	S	P	D	D	T	S	D	L	I	D	M	V	G	G	A	P	L	V	V	K	L	V
Query Conservation																										.
Alig confidence											.															.																																						.	.	.	.
Template Conservation											.																																																					.	.	.	.
Template Sequence		L	H	G	R	F	G	E	D	G	.	T	V	Q	G	F	L	E	L	L	G	K	P	Y	V	G	A	G	V	A	A	S	A	L	C	M	D	K	D	L	S	K	R	V	L	A	Q	A	G	V	P	V	V	P	W	V	A	V	R	K	G	E	P	.	.	.	.	P	V	V	P	F	D	P	P	F	F	V	K	P	A
Template Known Secondary structure				S	T	T	T	T	S	S	.										T			B	S	S																						T	T											T	T	S		.	.	.	.					S		S							T
Template Predicted Secondary structure											.																																																					.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.										.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.
Query Sequence		E	G	T	Q	G	I	G	V	V	L	A	E	T	R	Q	A	A	E	S	V	I	D	A	F	R	G	L	N	A	H	I	L	V	Q	E	Y	I	K	E	A	Q	G	C	D	I	R	C	L	V	V	G	D	E	V	V	A	A	I	E	R	R	A	K	E	G	D	F	R	S	.	.	.	.	.	.	.	.	.	N	L
Query Conservation																																																																							.	.	.	.	.	.	.	.	.
Alig confidence																																																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	G	S	S	V	G	I	S	R	V	E	R	F	Q	D	L	E	A	A	L	A	L	A	F	R	Y	D	E	K	A	V	V	E	K	A	L	S	P	V	R	E	L	E	V	G	V	L	G	N	V	F	G	E	A	S	P	V	G	E	V	R	Y	E	A	P	F	Y	D	Y	E	T	K	Y	T	P	G	R	A	E
Template Known Secondary structure		T			T	T	T	T						S	G	G	G									T	T	T		S									S	S										S	S	S	S												S	S	S	S	S							S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.							.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																														.																									.	.	.	.	.	.
Query SS confidence																														.																									.	.	.	.	.	.
Query Sequence		H	R	G	G	A	A	S	V	A	S	I	T	P	Q	E	R	E	I	A	I	K	A	A	R	T	M	A	L	.	D	V	A	G	V	D	I	L	R	A	N	R	G	P	L	V	M	E	V	N	A	S	P	G	.	.	.	.	.	.	L	E	G	I	E	K	T	T	G	I	D	I	A	G	K	M	I	R	W	I	E
Query Conservation																														.																									.	.	.	.	.	.
Alig confidence																														.																									.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	I	P	A	P	L	D	P	G	T	Q	E	T	V	Q	E	L	A	L	K	A	Y	K	V	L	G	V	R	G	M	A	R	V	D	F	F	L	A	E	G	E	L	Y	L	N	E	L	N	T	I	P	G	F	T	P	T	S	M	Y	P	R	L	F	E	A	G	G	V	A	Y	P	E	L	L	R	R	L	V	E
Template Known Secondary structure				S	S																							T			S										T	T									S	S				S	T	T		S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		288
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		316

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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