Job Description P0C0U4 Confidence 99.95% Date Thu Jan 5 11:30:01 GMT 2012 Rank 49 Aligned Residues 250 % Identity 17% Template c2pn1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:carbamoylphosphate synthase large subunit; PDBTitle: crystal structure of carbamoylphosphate synthase large subunit (split2 gene in mj) (zp_00538348.1) from exiguobacterium sp. 255-15 at 2.00 a3 resolution Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.														.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	A	I	L	S	R	D	G	T	L	Y	S	C	K	R	L	R	E	A	A	I	Q	R	G	H	L	V	E	I	L	D	P	L	S	C	Y	M	N	I	N	P	A	A	S	S	I	H	Y	K	G	R	K	L	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	A	V	I	P	R	I	G	T	A
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.
Template Sequence		H	L	L	I	T	S	A	G	R	R	A	K	L	V	E	Y	F	V	K	E	.	.	F	K	T	G	R	V	S	T	A	D	C	S	P	L	A	S	A	L	Y	X	A	D	Q	H	Y	I	V	P	K	I	D	E	V	E	Y	I	D	H	L	L	T	L	C	Q	D	E	G	V	T	A	L	L	T	L	I	D	P	E
Template Known Secondary structure							S		T	T												.	.			S	S							S		T	T		G	G	G	G	G	S	S	S							T	T	S	T	T													T							S	S
Template Predicted Secondary structure																						.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		I	T	F	Y	G	T	A	A	L	R	Q	F	E	M	L	G	S	Y	P	L	.	N	E	S	V	A	I	A	R	A	R	D	K	L	R	S	M	Q	L	L	A	R	Q	G	I	D	L	P	V	T	G	I	A	H	S	P	D	D	T	S	D	L	I	D	M	V	G	G	A	P	L	V	V	K	L	V	E	G	T	Q
Query Conservation																						.
Alig confidence						.																.																																														.												.	.
Template Conservation						.																																																														.												.	.
Template Sequence		L	G	L	L	.	A	Q	A	T	E	R	F	Q	A	I	G	V	T	V	I	V	S	P	Y	A	A	C	E	L	C	F	D	K	Y	T	X	Y	E	Y	C	L	R	Q	G	I	A	H	A	R	T	Y	A	T	X	A	S	F	E	E	A	L	A	A	G	E	V	.	Q	L	P	V	F	V	K	P	R	N	G	.	.
Template Known Secondary structure						.			T						T	T	T																B												T								S	S										T	T	S	S	.		S							S	B		.	.
Template Predicted Secondary structure						.																																																														.												.	.
Template SS confidence
		83	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	G	V	V	L	A	E	T	R	Q	A	A	E	S	V	I	D	A	F	R	G	L	N	A	H	I	L	V	Q	E	Y	I	K	E	A	Q	G	C	D	I	R	C	L	V	V	G	D	E	V	V	A	A	I	E	R	R	A	K	E	G	D	F	R	S	N	L	H	R	G	G	A	A	S	V	A	S	I	T	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	I	V	Q	E	L	L	V	G	Q	E	L	G	V	D	A	Y	V	D	L	I	S	G	K	V	T	S	I	F	I	K	.	.	.	.	E	K	L	T	X	R	A	G	E	T	D	K	S	R	S	V	L	R	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S											T	T	T										.	.	.	.							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template SS confidence
																											182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																	.																							.
Query SS confidence																	.																							.
Query Sequence		Q	E	R	E	I	A	I	K	A	A	R	T	M	A	L	.	D	V	A	G	V	D	I	L	R	A	N	R	G	P	L	V	M	E	V	N	A	S	.	P	G	L	E	G	I	E	K	T	T	G	I	D	I	A	G	K	M	I	R	W	I
Query Conservation																	.																							.
Alig confidence																	.																							.
Template Conservation
Template Sequence		D	V	F	E	L	V	E	H	V	L	D	G	S	G	L	V	G	P	L	D	F	D	L	F	D	V	A	G	T	L	Y	L	S	E	I	N	P	R	F	G	G	G	Y	P	H	A	Y	E	C	G	V	N	F	P	A	Q	L	Y	R	N	L
Template Known Secondary structure												T	T	T														T	T									S	S			T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions