Job Description P0C0U4 Confidence 99.96% Date Thu Jan 5 11:30:01 GMT 2012 Rank 39 Aligned Residues 257 % Identity 14% Template c2p0aA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin-3; PDBTitle: the crystal structure of human synapsin iii (syn3) in complex with2 amppnp Resolution 1.90 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		G	H	L	V	E	I	L	D	P	L	S	C	Y	M	N	I	N	P	A	A	S	S	I	H	Y	K	G	R	K	L	P	H	F	D	A	V	I	P	R	I	G	T	A	I	T	F	Y	G	T	.	.	.	A	A	L	R	Q	F	E	M	L	G	S	Y	P	L	N	E	S	V	A	I	A	R	A	R	D	K	L	R
Query Conservation																																																			.	.	.
Alig confidence																																.																			.	.	.
Template Conservation																																.
Template Sequence		E	I	R	V	E	Q	A	E	F	S	E	L	N	L	A	A	Y	V	T	G	G	C	M	V	D	M	Q	R	S	F	.	K	P	D	F	I	L	V	R	Q	H	A	Y	S	M	A	L	G	E	D	Y	R	S	L	V	I	G	L	Q	Y	G	G	L	P	A	V	N	S	L	Y	S	V	Y	N	F	C	S	K	P	W
Template Known Secondary structure										G	G	G							T	T	S											.			S						S		S			G	G	G	T													T	T					S								T	T
Template Predicted Secondary structure																																.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		S	M	Q	L	L	A	R	Q	G	I	D	L	P	V	T	G	I	A	H	S	P	D	D	T	S	D	L	I	D	.	.	.	M	V	G	G	A	P	L	V	V	K	L	V	E	G	T	Q	G	I	G	V	V	L	A	E	T	R	Q	A	A	E	S	V	I	D	A	F	R	G	L	N	A	H	I	L	V	Q	E	Y
Query Conservation																															.	.	.
Alig confidence																															.	.	.
Template Conservation
Template Sequence		V	F	S	Q	L	I	K	I	F	H	S	L	G	P	E	K	F	P	L	V	E	Q	T	F	F	P	N	H	K	P	M	V	T	A	P	H	F	P	V	V	V	K	L	G	H	A	H	A	G	M	G	K	I	K	V	E	N	Q	L	D	F	Q	D	I	T	S	V	V	A	M	A	K	T	Y	A	T	T	E	A	F
Template Known Secondary structure															T	T	T	S		B							S	S	S	T	T					S	S	S	S						S	S			T	T	T	T						S															T
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.
Predicted Secondary structure																																																																.															.
Query SS confidence																																																																.															.
Query Sequence		I	K	E	A	Q	G	C	D	I	R	C	L	V	V	G	D	E	V	V	A	A	I	E	R	R	A	K	E	G	D	F	R	S	N	L	H	R	G	G	A	A	S	V	A	S	I	T	P	Q	E	R	E	I	A	I	K	A	A	R	T	M	A	.	L	D	V	A	G	V	D	I	L	R	A	N	R	G	.	P	L
Query Conservation																																																																.															.
Alig confidence						.	.																			.												.																										.															.
Template Conservation						.	.																			.												.
Template Sequence		I	D	S	K	.	.	Y	D	I	R	I	Q	K	I	G	S	N	Y	K	A	Y	M	R	T	.	S	I	S	G	N	W	K	A	N	T	G	.	S	A	M	L	E	Q	V	A	M	T	E	R	Y	R	L	W	V	D	S	C	S	E	M	F	G	G	L	D	I	C	A	V	K	A	V	H	S	K	D	G	R	D	Y
Template Known Secondary structure						.	.									T	T									.		S	S	S		S	S	T	T	S	S	.	S																				T	T	G	G	G			S										T	T	S
Template Predicted Secondary structure						.	.																			.												.
Template SS confidence
		287	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		258	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		V	M	E	V	N	.	.	A	S	P	G	L	E	G	I	E	K	T	T	G	I	D	I	A	G	K	M	I	R	W	I	E
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		I	I	E	V	M	D	S	S	M	P	L	I	G	E	H	V	E	E	D	R	Q	L	M	A	D	L	V	V	S	K	M	S
Template Known Secondary structure								T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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