Job Description P0C0U4 Confidence 99.96% Date Thu Jan 5 11:30:01 GMT 2012 Rank 45 Aligned Residues 284 % Identity 13% Template c1pk8D_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:rat synapsin i; PDBTitle: crystal structure of rat synapsin i c domain complexed to2 ca.atp Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.				.	.	70	.	.	.
Predicted Secondary structure													.	.																																																.	.										.	.	.
Query SS confidence													.	.																																																.	.										.	.	.
Query Sequence		M	K	I	A	I	L	S	R	D	G	T	.	.	L	Y	S	C	K	R	L	R	E	A	A	I	Q	R	G	H	L	V	E	I	L	D	P	L	S	C	Y	M	N	I	N	P	A	A	S	S	I	H	Y	K	G	R	K	L	P	H	F	.	.	D	A	V	I	P	R	I	G	T	.	.	.	A	I	T	F	Y	G
Query Conservation													.	.																																																.	.										.	.	.
Alig confidence													.	.																																																.	.										.	.	.
Template Conservation
Template Sequence		A	R	V	L	L	V	I	D	E	P	H	T	D	W	A	K	Y	F	K	G	K	K	I	H	G	E	I	D	I	K	V	E	Q	A	E	F	S	D	L	N	L	V	A	H	A	N	G	G	F	S	V	D	M	E	V	V	V	R	S	L	K	P	D	F	V	L	I	R	Q	H	A	F	S	M	A	R	N	G	D	Y
Template Known Secondary structure											T	T	S							T	T				T	T	T										G	G	G							T	T	S																S						S		S			S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		T	A	A	L	R	Q	F	E	M	L	G	S	Y	P	L	N	E	S	V	A	I	A	R	A	R	D	K	L	R	S	M	Q	L	L	A	R	Q	G	I	D	L	P	V	T	G	I	A	H	S	P	D	.	.	.	D	T	S	D	L	I	D	M	V	G	G	A	P	L	V	V	K	L	V	E	G	T	Q	G	I	G
Query Conservation																																																					.	.	.
Alig confidence																																																					.	.	.
Template Conservation
Template Sequence		R	S	L	V	I	G	L	Q	Y	A	G	I	P	S	V	N	S	L	H	S	V	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	R	L	H	K	K	L	G	T	E	E	F	P	L	I	D	Q	T	F	Y	P	N	H	K	E	M	L	S	S	T	T	Y	P	V	V	V	K	M	G	H	A	H	S	G	M	G
Template Known Secondary structure											T	T					S								T	S	S																	T	T	T			B							S	S	G	G	G					S	S	S	S						S	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	L	A	E	T	R	Q	A	A	E	S	V	I	D	A	F	R	G	L	N	A	H	I	L	V	Q	E	Y	I	K	E	A	Q	G	C	D	I	R	C	L	V	V	G	D	E	V	V	A	A	I	E	R	R	A	K	E	G	D	F	R	S	N	L	H	R	G	G	A	A	S	V	A	S	I	T	P	Q	E	R
Query Conservation
Alig confidence																																		.	.															.																	.
Template Conservation																																		.	.															.																	.
Template Sequence		K	V	K	V	D	N	Q	H	D	F	Q	D	I	A	S	V	V	A	L	T	K	T	Y	A	T	A	E	P	F	I	D	A	.	.	K	Y	D	V	R	V	Q	K	I	G	Q	N	Y	K	.	A	Y	M	R	T	S	V	S	G	N	W	K	T	N	T	G	.	S	A	M	L	E	Q	I	A	M	S	D	R	Y	K
Template Known Secondary structure							S															T	S											.	.										T	T				.							S	S	S		S	S	T	T	S	S	.	S
Template Predicted Secondary structure																																		.	.															.																	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.
		231	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure												.																.								.	.
Query SS confidence												.																.								.	.
Query Sequence		E	I	A	I	K	A	A	R	T	M	.	A	L	D	V	A	G	V	D	I	L	R	A	N	R	G	.	P	L	V	M	E	V	N	.	.	A	S	P	G	L	E	G	I	E	K	T	T	G	I	D	I	A	G	K	M	I	R	W	I	E	R
Query Conservation												.																.								.	.
Alig confidence												.																.								.	.
Template Conservation
Template Sequence		L	W	V	D	T	C	S	E	I	F	G	G	L	D	I	C	A	V	E	A	L	H	G	K	D	G	R	D	H	I	I	E	V	V	G	S	S	M	P	L	I	G	D	H	Q	D	E	D	K	Q	L	I	V	E	L	V	V	N	K	M	T	Q
Template Known Secondary structure								T	T	G	G	G			S										T	T	S										T	T					S	T	T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions