Job Description P0C0U4 Confidence 99.96% Date Thu Jan 5 11:30:01 GMT 2012 Rank 47 Aligned Residues 227 % Identity 16% Template c1i7nA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain Resolution 1.90 Å

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		57	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130
Predicted Secondary structure													.	.	.																																																									.	.	.
Query SS confidence													.	.	.																																																									.	.	.
Query Sequence		H	F	D	A	V	I	P	R	I	G	T	.	.	.	A	I	T	F	Y	G	T	A	A	L	R	Q	F	E	M	L	G	S	Y	P	L	N	E	S	V	A	I	A	R	A	R	D	K	L	R	S	M	Q	L	L	A	R	Q	G	I	D	L	P	V	T	G	I	A	H	S	P	.	.	.	D	D	T	S	D	L	I
Query Conservation													.	.	.																																																									.	.	.
Alig confidence													.	.	.																																																									.	.	.
Template Conservation
Template Sequence		R	P	D	F	V	L	I	R	Q	H	A	F	G	M	A	E	N	E	D	F	R	H	L	V	I	G	M	Q	Y	A	G	L	P	S	I	N	S	L	E	S	I	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	A	I	F	K	T	L	G	G	E	K	F	P	L	I	E	Q	T	Y	Y	P	N	H	R	E	M
Template Known Secondary structure				S						S					S	S	T	T													T	T					S								T	S	S																	T	T	T	S		B							S	S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	V	G	G	A	P	L	V	V	K	L	V	E	G	T	Q	G	I	G	V	V	L	A	E	T	R	Q	A	A	E	S	V	I	D	A	F	R	G	L	N	A	H	I	L	V	Q	E	Y	I	K	E	A	Q	G	C	D	I	R	C	L	V	V	G	D	E	V	V	A	A	I	E	R	R	A	K	E	G	D	F
Query Conservation
Alig confidence																																																						.	.																				.
Template Conservation																																																						.	.																				.
Template Sequence		L	T	L	P	T	F	P	V	V	V	K	I	G	H	A	H	S	G	M	G	K	V	K	V	E	N	H	Y	D	F	Q	D	I	A	S	V	V	A	L	T	Q	T	Y	A	T	A	E	P	F	I	D	A	.	.	K	Y	D	I	R	V	Q	K	I	G	N	N	Y	K	A	Y	M	R	T	.	S	I	S	G	N	W
Template Known Secondary structure		S	S				S	S						S	S		S	T	T	T	T						S															T												.	.										T	T									.	S	S		T	T	T
Template Predicted Secondary structure																																																						.	.																				.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																.																.								.	.
Query SS confidence																																.																.								.	.
Query Sequence		R	S	N	L	H	R	G	G	A	A	S	V	A	S	I	T	P	Q	E	R	E	I	A	I	K	A	A	R	T	M	.	A	L	D	V	A	G	V	D	I	L	R	A	N	R	G	.	P	L	V	M	E	V	N	.	.	A	S	P	G	L	E	G	I	E	K	T	T	G	I	D	I	A	G	K	M	I	R	W	I
Query Conservation																																.																.								.	.
Alig confidence							.																									.																.								.	.
Template Conservation							.
Template Sequence		K	T	N	T	G	.	S	A	M	L	E	Q	I	A	M	S	D	R	Y	K	L	W	V	D	A	C	S	E	M	F	G	G	L	D	I	C	A	V	K	A	V	H	G	K	D	G	K	D	Y	I	F	E	V	M	D	C	S	M	P	L	I	G	E	H	Q	V	E	D	R	Q	L	I	T	D	L	V	I	S	K	M
Template Known Secondary structure		S		S			.		S	S																		T	T	G	G	G			S										T	T	S										T	T					S	S
Template Predicted Secondary structure							.
Template SS confidence
		337	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		287
Predicted Secondary structure
Query SS confidence
Query Sequence		E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		416

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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