Job Description P0C0U4 Confidence 100.00% Date Thu Jan 5 11:30:01 GMT 2012 Rank 19 Aligned Residues 291 % Identity 16% Template c1ehiB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine:d-lactate ligase; PDBTitle: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant2 leuconostoc mesenteroides Resolution 2.38 Å

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		2	.	.	.	.	.	.	.	10	.	.							.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure													.	.	.	.	.	.															.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.															.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	A	I	L	S	R	D	G	T	L	.	.	.	.	.	.	Y	S	C	K	R	L	R	E	A	A	I	Q	R	G	.	H	L	V	E	I	L	D	P	L	S	C	Y	M	N	I	N	P	A	A	S	S	I	H	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.	.	.	.	.															.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.															.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	A	L	I	F	G	G	N	S	S	E	H	D	V	S	K	R	S	A	Q	N	F	Y	N	A	I	E	A	T	G	K	Y	E	I	I	V	F	A	I	A	Q	N	G	F	F	L	D	T	E	S	S	K	K	I	L	A	L	E	D	E	Q	P	I	V	D	A	F	M	K	T	V	D	A	S	D	P	L	A	R
Template Known Secondary structure										S	S	T	T																	T	T	S	S										T	T	S													T	T												T	T			T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
				51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure		.	.																																							.																																							.
Query SS confidence		.	.																																							.																																							.
Query Sequence		.	.	K	G	R	K	L	P	H	F	D	A	V	I	P	R	I	G	T	A	I	T	F	Y	G	T	A	A	L	R	Q	F	E	M	L	G	S	Y	P	L	.	N	E	S	V	A	I	A	R	A	R	D	K	L	R	S	M	Q	L	L	A	R	Q	G	I	D	L	P	V	T	G	I	A	H	S	P	D	D	T	.
Query Conservation		.	.																																							.																																							.
Alig confidence		.	.																								.															.																																							.
Template Conservation																											.
Template Sequence		I	H	A	L	K	S	A	G	D	F	D	I	F	F	P	V	V	H	G	N	L	G	E	D	G	.	T	L	Q	G	L	F	K	L	L	D	K	P	Y	V	G	A	P	L	R	G	H	A	V	S	F	D	K	A	L	T	K	E	L	L	T	V	N	G	I	R	N	T	K	Y	I	V	V	D	P	E	S	A	N	N
Template Known Secondary structure				T	T	S	T	T				S							T	T	T	T	T	S	S	S	.									T	T			B	S	S											S											T	T											T	T	G	G	G	G
Template Predicted Secondary structure																											.
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
				127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	S	D	L	I	D	M	V	G	G	A	P	L	V	V	K	L	V	E	G	T	Q	G	I	G	V	V	L	A	E	T	R	Q	A	A	E	S	V	I	D	A	F	R	G	L	N	A	H	I	L	V	Q	E	Y	I	K	E	A	Q	G	C	D	I	R	C	L	V	V	G	D	E	V	V	A	A	I	E	R	R
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		W	S	W	D	K	I	V	A	E	L	G	N	I	V	F	V	K	A	A	N	Q	G	S	S	V	G	I	S	R	V	T	N	A	E	E	Y	T	E	A	L	S	D	S	F	Q	Y	D	Y	K	V	L	I	E	E	A	V	N	G	A	R	E	L	E	V	G	V	I	G	N	D	Q	P	L	V	S	E	I	G	A	H
Template Known Secondary structure											T		S							S	S			S	S	T	T						S												T	T	T		S																					S	S	S
Template Predicted Secondary structure
Template SS confidence
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.							.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																								.														.												.	.	.	.	.	.
Query SS confidence																																								.														.												.	.	.	.	.	.
Query Sequence		A	K	E	G	D	F	R	S	N	L	H	R	G	G	A	A	S	V	A	S	I	T	P	Q	E	R	E	I	A	I	K	A	A	R	T	M	A	L	.	D	V	A	G	V	D	I	L	R	A	N	R	G	.	P	L	V	M	E	V	N	A	S	P	G	.	.	.	.	.	.	L	E	G	I	E	K	T	T	G	I
Query Conservation																																								.														.												.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.																							.														.												.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.
Template Sequence		T	V	H	F	Q	I	P	A	Q	.	.	.	.	.	.	.	L	S	P	E	V	T	K	E	V	K	Q	M	A	L	D	A	Y	K	V	L	N	L	R	G	E	A	R	M	D	F	L	L	D	E	N	N	V	P	Y	L	G	E	P	N	T	L	P	G	F	T	N	M	S	L	F	K	R	L	W	D	Y	S	D	I
Template Known Secondary structure							S	S			.	.	.	.	.	.	.																				T	T													T	T										S	S				S	T	T	S	G	G	G	T	T	G	G	G	G	T
Template Predicted Secondary structure											.	.	.	.	.	.	.
Template SS confidence
		644	.	.	.	.	.	650	.	.								.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.								.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure												.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.
Query Sequence		D	I	A	G	K	M	I	R	W	I	.	.	.	.	.	.	.	E	R	H	A	T	T	E	Y	C	L	K	T	G	G
Query Conservation												.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	N	A	K	L	V	D	M	L	I	D	Y	G	F	E	D	F	A	Q	N	K	K	L	S	Y	S	F	V	S	L	G
Template Known Secondary structure																						T	S
Template Predicted Secondary structure
Template SS confidence
		739	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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