Job Description P0ADX9 Confidence 88.09% Date Thu Jan 5 11:22:04 GMT 2012 Rank 369 Aligned Residues 125 % Identity 14% Template c3pvcA_ PDB info PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Resolution 2.31 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.														.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	C	L	D	C	F	A	G	S	G	A	L	G	L	E	A	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	A	A	G	A	T	L	I	E	M	D	R	A	V	S	Q	Q	L	I	K	N	L	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	F	A	E	T	G	F	G	T	G	L	N	F	L	T	L	W	R	D	F	A	L	F	R	Q	Q	S	P	N	A	T	L	R	R	L	H	Y	I	S	F	E	K	Y	P	L	H	V	A	D	L	A	S	A	H	A	R	W	P	E	L	A	S	F	A	E	Q	L	R	A	Q	W	P	L	P	L	A	G	C	H	R
Template Known Secondary structure									T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T						S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
						98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.
Predicted Secondary structure		.	.	.	.																								.	.	.	.									.	.																																		.
Query SS confidence		.	.	.	.																								.	.	.	.									.	.																																		.
Query Sequence		.	.	.	.	L	K	A	G	N	A	R	V	V	N	S	N	A	M	S	F	L	A	Q	K	G	T	P	.	.	.	.	H	N	I	V	F	V	D	P	.	.	P	F	R	R	G	L	L	E	E	T	I	N	L	L	E	D	N	G	W	L	A	D	E	A	L	I	Y	V	E	S	E	V	E	.	N	G	L	P	T
Query Conservation		.	.	.	.																								.	.	.	.									.	.																																		.
Alig confidence		.	.	.	.																								.	.	.	.									.	.																.	.																	.
Template Conservation																																																										.	.
Template Sequence		I	L	L	A	D	G	A	I	T	L	D	L	W	F	G	D	V	N	T	L	L	P	T	L	D	D	S	L	N	N	Q	V	D	A	W	F	L	D	G	F	A	P	N	P	D	X	W	N	E	Q	L	F	N	A	X	A	.	.	R	X	T	R	P	G	G	T	F	S	T	F	T	A	A	G	F	V	R	R	G	L
Template Known Secondary structure					T	T	T	T								S						G	G	G			G	G	G	T	T									S	S					T	T		S									.	.												S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	A	N	W	S	L	H	R	E	K	V	A	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	A	G	F	N	V	T	K	V	K	G	F	G	Q
Template Known Secondary structure				T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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