Job Description P0ADX9 Confidence 88.54% Date Thu Jan 5 11:22:04 GMT 2012 Rank 366 Aligned Residues 125 % Identity 14% Template c3ps9A_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of mnmc from e. coli Resolution 2.54 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.														.	.	.	.	.	.	80	.	.	.	.															.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Query Sequence		Q	C	L	D	C	F	A	G	S	G	A	L	G	L	E	A	L	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	A	G	A	T	L	I	E	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	V	S	Q	Q	L	I	K	N	L	A	T	L	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R
Template Known Secondary structure									T	T	S																		T	T	S	S											S	S												T	T		G	G	G																S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
							99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.
Predicted Secondary structure		.	.	.	.	.																							.	.	.	.													.	.	.	.																														.
Query SS confidence		.	.	.	.	.																							.	.	.	.													.	.	.	.																														.
Query Sequence		.	.	.	.	.	K	A	G	N	A	R	V	V	N	S	N	A	M	S	F	L	A	Q	K	G	T	P	.	.	.	.	H	N	I	V	F	V	D	P	P	F	R	R	.	.	.	.	G	L	L	E	E	T	I	N	L	L	E	D	N	G	W	L	A	D	E	A	L	I	Y	V	E	S	E	V	E	.	N	G	L
Query Conservation		.	.	.	.	.																							.	.	.	.													.	.	.	.																														.
Alig confidence		.	.	.	.	.																							.	.	.	.													.	.	.	.												.	.																	.
Template Conservation																																																												.	.
Template Sequence		L	L	L	D	A	G	R	V	T	L	D	L	W	F	G	D	I	N	E	L	T	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D	M	W	T	Q	N	L	F	N	A	M	A	.	.	R	L	A	R	P	G	G	T	L	A	T	F	T	S	A	G	F	V	R	R
Template Known Secondary structure					G	G	G	T								S						G	G	G	B		G	G	G	T	T										S		G	G	G		G	G	G	S										.	.												S
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	V	P	A	N	W	S	L	H	R	E	K	V	A	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	Q	D	A	G	F	T	M	Q	K	R	K	G	F	G	R
Template Known Secondary structure							T									S	T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions