Job Description P0ADX9 Confidence 99.77% Date Thu Jan 5 11:22:04 GMT 2012 Rank 25 Aligned Residues 146 % Identity 20% Template c1uwvA_ PDB info PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase Resolution 1.95 Å

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		7	.	.	10	.	.	.	.	.	.	.						.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.																.	.	.
Query SS confidence													.	.	.	.	.																.	.	.
Query Sequence		S	G	S	G	Q	I	R	I	I	G	G	.	.	.	.	.	Q	W	R	G	R	K	L	P	V	P	D	S	P	G	L	.	.	.	R	P	T	T	D	R	V	R	E	T	L	F	N	W	L	A	P	V	I	V	D	A	Q	C	L	D	C	F	A	G	S	G	A	L	G	L	E	A	L	S	R	Y	A	A	G	A
Query Conservation													.	.	.	.	.																.	.	.
Alig confidence													.	.	.	.	.																.	.	.																		.																			.
Template Conservation																																																					.																			.
Template Sequence		P	D	S	E	I	L	E	T	V	S	G	E	X	P	W	Y	D	S	N	G	L	R	L	T	F	S	P	R	D	F	I	Q	V	N	A	G	V	N	Q	K	X	V	A	R	A	L	E	W	L	D	V	.	Q	P	E	D	R	V	L	D	L	F	C	G	X	G	N	F	T	L	.	P	L	A	T	Q	A	A	S	V
Template Known Secondary structure		S	S	S	S															T	T							S	S	S				S	B																T		.		T	T							S		T	T	T	T	T			.				T	T	S	S
Template Predicted Secondary structure																																																					.																			.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		T	L	I	E	M	D	R	A	V	S	Q	Q	L	I	K	N	L	A	T	L	K	A	G	N	A	R	V	V	N	S	N	A	M	S	F	L	A	Q	K	.	.	.	G	T	P	H	N	I	V	F	V	D	P	P	F	R	R	G	L	L	E	E	T	I	N	L	L	E	D	N	G	W	L	A	D	E	A	L	I	Y
Query Conservation																																									.	.	.
Alig confidence																																									.	.	.													.					.										.	.	.
Template Conservation																																																								.					.										.	.	.
Template Sequence		V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	.	R	A	G	A	.	A	G	V	X	Q	Q	I	I	K	.	.	.	L	E	P	I	R	I	V	Y
Template Known Secondary structure						S															T	T			S								T	T	S			S	S	S	G	G	G	T	T			S								.	T	T			.										.	.	.				S
Template Predicted Secondary structure																																																								.					.										.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.		370	.	.	.	.	.	.	.	.				.	380	.	.	.	.	.	.
		156	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	C	N
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions