Return to main results Retrieve Phyre Job Id

Job DescriptionP39310
Confidence42.70%DateThu Jan 5 11:59:16 GMT 2012
Rank13Aligned Residues41
% Identity20%Templated2obpa1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain ReutB4095-like
Resolution1.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   138.140.........150.........160.........170.........180.......
Predicted Secondary structure 
























Query SS confidence 

















































Query Sequence  TMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQNASGVVTG
Query Conservation 

  
  
  
                 
  
 


 
       
 
  
Alig confidence 


















.........





















Template Conservation 








  


 


 .........



  


      


 
 
Template Sequence  SLPKIAKRAQLPXSVLRRV. . . . . . . . . LTQLQAAGLADVSVEADGRGHA
Template Known Secondary structure  BT

.........TTS
TTS
Template Predicted Secondary structure 



.........








Template SS confidence 

















































   37..40.........50..... ....60.........70.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions