 |
Job Description | P39310 | Confidence | 42.70% | Date | Thu Jan 5 11:59:16 GMT 2012 |
Rank | 13 | Aligned Residues | 41 |
% Identity | 20% | Template | d2obpa1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| ReutB4095-like
|
Resolution | 1.70 |
|
  |   |
138 | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | M | A | Q | L | F | R | D | H | G | L | P | A | T | D | V | Y | A | M | A | Q | V | E | G | A | G | K | P | L | S | N | L | Q | N | G | Q | M | V | K | I | R | Q | N | A | S | G | V | V | T | G |
Query Conservation |   |
|
|   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|
|   |   |
|
|
|   |
|
|
|   | . | . | . | . | . | . | . | . | . |
|
|
|
|   |   |
|
|
|   |   |   |   |   |   |
|
|
|   |
|   |
|
Template Sequence |   |
S | L | P | K | I | A | K | R | A | Q | L | P | X | S | V | L | R | R | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
L | T | Q | L | Q | A | A | G | L | A | D | V | S | V | E | A | D | G | R | G | H | A |
Template Known Secondary structure |   |
B |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | T | T | S |  |  |  |  |  |
| T | T | S |
|  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
37 | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
  |
Send structure to FirstGlance for more viewing options
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|