Job Description P55140 Confidence 4.14% Date Thu Jan 5 12:06:10 GMT 2012 Rank 93 Aligned Residues 88 % Identity 18% Template c2owoA_ PDB info PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate Resolution 2.30 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																									.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query Sequence		Q	V	T	D	L	T	S	S	L	N	S	Q	E	K	K	E	L	T	H	K	L	E	S	I	F	N	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	Q	I	A	V	L	I	V	P	T	T	K	D	.	E	T	I	E	Q	Y	A	T	R	V	F	D	N
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation
Template Sequence		Y	H	V	M	D	A	P	E	I	P	D	A	E	Y	D	R	L	M	R	E	L	R	E	L	E	T	K	H	P	E	L	I	T	P	D	S	P	T	Q	R	V	G	A	A	P	L	A	A	F	S	Q	I	R	H	E	V	P	M	L	S	L	D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R
Template Known Secondary structure					T	T		S	S	B			T																	T	T	S			T	T	S	G	G	G			S					B								S	S										S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		83	.	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.		110	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.																	.						.
Query SS confidence								.	.	.	.	.	.																	.						.
Query Sequence		W	R	L	G	D	A	.	.	.	.	.	.	K	R	N	D	G	I	L	I	V	V	A	W	S	D	R	T	.	V	R	I	Q	V	.	G	Y	G	L	E	E
Query Conservation								.	.	.	.	.	.																	.						.
Alig confidence								.	.	.	.	.	.																	.						.
Template Conservation
Template Sequence		L	K	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G
Template Known Secondary structure		S	S	S													S	S									T	T									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions