Job Description P55140 Confidence 8.19% Date Thu Jan 5 12:06:10 GMT 2012 Rank 50 Aligned Residues 60 % Identity 13% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	D	L	T	S	S	L	N	S	Q	E	K	K	E	L	T	H	K	L	E	S	I	F	N	N	T	Q	V	Q	I	A	V	L	I	V	P	T	T	K	D	E	T	I	E	Q	Y	A	T	R	V	F	D	N	W	R	L	G	D	A	K	R	N	D	G	I	L	I
Query Conservation
Alig confidence										.	.																																																.	.	.	.	.	.
Template Conservation										.	.																																																.	.	.	.	.	.
Template Sequence		L	V	D	T	A	G	R	L	.	.	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	.	.	.	.	.	.	T	G	L	V	L
Template Known Secondary structure									S	.	.	S																			S								S	S	S		S													S			.	.	.	.	.	.
Template Predicted Secondary structure										.	.																																																.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.							240	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions