Job Description P60782 Confidence 2.08% Date Thu Jan 5 12:07:10 GMT 2012 Rank 79 Aligned Residues 182 % Identity 5% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence		M	S	A	I	A	P	G	M	I	L	I	A	Y	L	C	G	S	I	S	S	A	I	L	V	C	R	L	C	G	L	P	D	P	R	T	S	G	S	G	N	P	G	A	T	N	V	L	R	I	G	G	K	G	A	A	V	A	V	L	I	F	D	V	L	.	.	.	K	G	M	L	P	V	W	G	A	Y	E	L	G
Query Conservation																																																																		.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G	A	A	L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I
Template Known Secondary structure		T	T													T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																			T							T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.															.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	P	F	W	L	G	L	I	A	I	A	A	C	L	G	H	I	W	P	V	F	F	G	F	K	G	G	K	G	V	A	T	A	F	G	A	I	A	P	I	G	W	D	L	T	G	V	M	A	G	T	W	L	L	T	V	L	L	S	G	Y	S	S	L	G	A	I	V	S	A	L	I	A	P	F	Y	V	W	W
Query Conservation
Alig confidence																						.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.
Template Sequence		A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	.	.	.	.	.	.	.	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q	S	Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y
Template Known Secondary structure																			S	S		.	.	.	.	.	.	.	G	G	G																										T	T	S	S	S	S											S
Template Predicted Secondary structure																						.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	P	Q	F	T	F	P	V	S	M	L	S	C	L	I	L	L	R	H	H	D	N	I	Q	R	L	W	R	R	Q	E	T	K	I	W	T	K	F	K	R	K	R	E	K	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S
Template Known Secondary structure										T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions