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Job DescriptionP75712
Confidence96.13%DateThu Jan 5 12:13:21 GMT 2012
Rank8Aligned Residues318
% Identity11%Templatec3hfxA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter
Resolution3.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   71........80.........90.........100.. .......110.........120.........130.........140.....
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Query Sequence  FFIAAVMVLNGAAGSKYGVPFAMILRASYGVR. . . . . GALFPGLLRGGIAAIMWFGLQCYAGSLACLILIGKIWPGFLTL
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Template Sequence  SFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNF. YLVALIFAMGTSLGLATPLVTECMQWLFG. . . . .
Template Known Secondary structure  TS




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   151........160.........170.........180.........190..... ....200.........210.........220....
 
   146...150.........160.........170..... ....180.........190........ .200.........
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Query Sequence  GGDFTLLGLSLPGLITFLIFWLVNVGIGFG. . . . GGKVLNKFTAILNPCIYIVFGGM. . . . . . . . . . . . AIWAISLVGIG
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Template Sequence  . . . . . IPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPR
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   225....230.........240.........250.........260.........270.........280.........290.........
 
   210.........220.........230.........240.........250.........260.........270.........280.........
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Query Sequence  PIFDYIPSGIQKAENGGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFREQALGQTLGLVVAYILFAVAGVCIIAGASIH
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Template Sequence  MLFYTDPIAKGGFPQGWTVF. . . . . . YWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLL
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   300.........310......... 320.........330.........340.........350.........360.........370...
 
   290.........300.........310. ........320.........330.........340 .........350....
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Query Sequence  YGADTWNVLDIVQRWDSLFASF. . . . . . . . . . . FAVLVILMTTISTNATGNIIPAGYQIAAI. . . . APTKLTYKNGVLIA
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Template Sequence  IDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWS
Template Known Secondary structure  TTS


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   374.....380.........390.........400.........410.........420.........430.........440.........450...
 
   355....360.........370.........380.........390.........400.....
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Query Sequence  SIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVMRGQINL
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Template Sequence  ILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
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   454.....460.........470.........480.........490.........500....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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