Job Description P75712 Confidence 96.38% Date Thu Jan 5 12:13:21 GMT 2012 Rank 7 Aligned Residues 372 % Identity 12% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70									.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Query Sequence		T	Q	S	Q	R	T	W	K	T	F	N	Y	F	T	L	W	M	G	S	V	H	N	V	P	N	Y	V	M	V	G	G	F	F	I	.	.	.	.	.	.	.	L	G	L	S	T	F	S	I	M	L	A	I	I	L	S	A	.	.	.	.	.	.	.	.	F	F	I	A	A	V	M	V	L	N	G	A	A	G	S
Query Conservation																																				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	E	A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F
Template Known Secondary structure		T	T				S	S																																T			T	T	S		S	S														S																		T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.									.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.
Query Sequence		K	Y	G	V	P	F	A	M	I	L	.	.	.	.	.	.	.	.	R	A	S	Y	G	V	R	G	A	L	F	P	G	L	L	R	G	G	I	A	A	I	M	W	F	G	L	Q	C	Y	A	G	S	L	A	C	L	I	L	I	G	K	I	W	P	G	F	L	T	L	G	G	D	F	T	L	L	G	L	S	L	P
Query Conservation												.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.									.							.																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.							.																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	.	K	L	I	D	I	L	.	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	.	.	.	.	.	.	.	.	.	.	.	E	S	D	W	T
Template Known Secondary structure		T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S	.							.																									T	T	T	S			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.							.																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.												.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200								.	.	.	.	.	.	.	.	.												210	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.																								.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.																								.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	I	T	F	L	I	F	W	L	V	N	V	G	I	G	F	G	G	G	.	K	V	L	N	K	F	T	A	I	L	N	P	C	I	Y	I	V	F	G	G	M	A	I	.	.	.	.	.	.	.	W	A	I	S	L	V	G	I	G	.	.	.	.	.	.	.	.	.	.	.	P	I	F	D	Y	I	P	S	G
Query Conservation																						.																								.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																								.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T
Template Known Secondary structure													T	T	G	G	G	T	T	S			S																								S																									T			T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.									.	.
Predicted Secondary structure																																																													.											.	.	.	.	.	.	.	.
Query SS confidence																																																													.											.	.	.	.	.	.	.	.
Query Sequence		I	Q	K	A	E	N	G	G	F	L	F	L	V	V	I	N	A	V	V	A	V	W	A	A	P	A	V	S	A	S	D	F	T	Q	N	A	H	S	F	R	E	Q	A	L	G	Q	T	L	G	L	V	V	A	Y	I	L	F	A	V	.	A	G	V	C	I	I	A	G	A	S	.	.	.	.	.	.	.	.	I	H
Query Conservation																																																													.											.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.																																											.											.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.
Template Sequence		A	G	E	W	L	G	S	W	T	I	F	.	.	.	.	.	.	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G
Template Known Secondary structure								T	T				.	.	.	.	.	.							T	T												T	T	T																																				T
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.							370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	A	D	T	W	N	V	L	D	I	V	Q	R	W	D	S	L	F	A	S	F	F	A	V	L	V	I	L	M	T	T	I	S	T	N	A	T	G	N	I	I	P	A	G	Y	Q	I	A	A	I	A	P	T	K	L	T	Y	K	N	G	V	L	I	A	S	I	I	S	L	L	I	C	P	W	K	L	M	E	N
Query Conservation
Alig confidence																																																				.
Template Conservation																																																				.
Template Sequence		D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	.	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G
Template Known Secondary structure		T	T		S										T	S	T	T																															T	T	T	.	T		S	S																									G
Template Predicted Secondary structure																																																				.
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		Q	D	S	I	Y	L	F	L	D	I	I	G	G	M	L	G	P	V	I	G	V	M	M	A	H	Y	F	V	V	M	R	G	.	Q	I	N	L	D	E	L	Y	T	A	P
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		D	N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E
Template Known Secondary structure		G	G																																	T
Template Predicted Secondary structure
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.