Job Description P75712 Confidence 100.00% Date Thu Jan 5 12:13:21 GMT 2012 Rank 1 Aligned Residues 439 % Identity 20% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	G	Y	S	E	D	L	L	P	K	T	Q	S	Q	R	T	W	K	T	F	N	Y	F	T	L	W	M	G	S	V	H	N	V	P	N	Y	V	M	V	G	G	F	F	I	L	G	L	S	T	F	S	I	M	L	A	I	I	L	S	A	F	F	I	A	A	V	M	V	L	N	G	A	A	G	S	K	Y	G	V
Query Conservation
Alig confidence																																														.
Template Conservation																																														.
Template Sequence		R	S	L	L	N	P	S	N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	.	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	I
Template Known Secondary structure			B				S	T	T	S				G	G	G			B															S	T										T	.	T	T	S																								T
Template Predicted Secondary structure																																														.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	A	M	I	L	R	A	S	Y	G	V	R	G	A	L	F	P	G	L	L	R	G	G	I	A	A	I	M	W	F	G	L	Q	C	Y	A	G	S	L	A	C	L	I	L	I	G	K	I	W	P	G	F	L	T	L	G	G	D	F	T	L	L	G	L	S	L	P	G	L	I	T	F	L	I	F	W	L	V	N
Query Conservation
Alig confidence																								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	F	T	V	A	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	.	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	L	P	L	W	I	V	I	F	G	A	I	Q
Template Known Secondary structure							T	T	T	T	S		T	T	T	T								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.															140	.	.	.	.	.	.	.	.	.	150	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	I	G	F	G	G	G	K	V	L	N	K	F	T	A	I	L	N	P	C	I	Y	I	V	F	G	G	M	A	I	W	A	I	S	L	V	G	I	G	P	I	F	D	Y	I	P	S	G	I	Q	K	A	E	N	G	G	F	L	F	L	V	V	I	N	A	V	V	A	V	W	A	A	P	A	V	S	A	S	D
Query Conservation
Alig confidence																																																									.	.	.	.
Template Conservation																																																									.	.	.	.
Template Sequence		V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	.	.	.	.	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D
Template Known Secondary structure						T	T																																T							T	T				S	S			S		.	.	.	.										T	T	T					T	T	T
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.							.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.
Query Sequence		F	T	Q	N	A	H	S	F	R	E	Q	A	L	G	Q	T	L	G	L	V	V	A	Y	I	L	F	A	V	A	G	V	C	I	I	A	G	A	S	I	H	Y	G	.	.	.	.	.	.	A	D	T	W	N	V	L	D	I	V	Q	R	W	D	S	L	F	A	S	F	F	A	V	L	V	I	L	M	T	T	I	S
Query Conservation																																												.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A
Template Known Secondary structure				T	T	B				T	T																																								S		S											T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		324				.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		T	.	.	.	N	A	T	G	N	I	I	P	A	G	Y	Q	I	A	A	I	A	P	T	K	L	T	Y	K	N	G	V	L	I	A	S	I	I	S	L	L	I	C	P	W	K	L	M	E	N	Q	D	S	I	Y	L	F	L	D	I	I	G	G	M	L	G	P	V	I	G	V	M	M	A	H	Y	F	V	V	M	R
Query Conservation			.	.	.
Alig confidence			.	.	.																																						.	.	.
Template Conservation																																											.	.	.
Template Sequence		T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	.	.	.	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R
Template Known Secondary structure				T	T						T											S	T	T	T																	T	.	.	.		G	G	G	T														T	T													T	T	S	T
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350				.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	I	N	L	D	E	L	Y	T	A	P	G	D	Y	K	Y	Y	D	N	G	F	N	L	T	A	F	S	V	T	L	V	A	V	I	L	S	L	G	G	K	F	I	H	F	M	E	P	L	S	R	V	S	W	F	V	G	V	I	V	A	F	A	A	Y	A	L	L	K	K	R	T	T	A	E	K	T	G	E	Q
Query Conservation
Alig confidence												.																															.	.	.	.	.	.	.	.	.
Template Conservation												.																															.	.	.	.	.	.	.	.	.
Template Sequence		R	R	I	S	L	H	D	L	Y	R	.	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	.	.	.	.	.	.	.	.	.	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S
Template Known Secondary structure		T								T	B	.	S	S	S	T	T		T	B	T	T	B																	T		G	.	.	.	.	.	.	.	.	.	G	G																					T	T	T	S		S
Template Predicted Secondary structure												.																															.	.	.	.	.	.	.	.	.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.		.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.										.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
		481
Predicted Secondary structure
Query SS confidence
Query Sequence		K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		457