Job Description P0A7F6 Confidence 7.29% Date Thu Jan 5 11:05:34 GMT 2012 Rank 73 Aligned Residues 63 % Identity 21% Template c1s9vA_ PDB info PDB header:immune system Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dq(3) PDBTitle: crystal structure of hla-dq2 complexed with deamidated2 gliadin peptide Resolution 2.22 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	N	I	L	N	I	A	R	Q	D	Y	E	P	Q	G	A	S	V	T	I	L	V	S	E	E	P	V	D	P	K	L	I	D	K	T	E	H	P	G	P	L	P	E	T	V	V	A	H	L	D	K	S	H	I	C	V	H	T	Y	P	E	S	H	P	E	G	G	L	C	T	F	R	A	D	I	E	V	S	T
Query Conservation
Alig confidence																									.	.	.	.																																.	.					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.																																.	.					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	P	N	I	L	I	C	L	V	D	N	I	F	P	P	V	V	N	I	T	W	L	S	.	.	.	.	N	G	H	S	V	T	E	G	V	S	E	T	S	F	L	S	K	S	D	H	S	F	F	K	I	S	Y	L	T	L	L	.	.	P	S	A	E	.	.	.	.	.	.	.	.	.	.	.	.	E	S	Y	D
Template Known Secondary structure		S													S	S									.	.	.	.	T	T					S	S										T	T	S												.	.			T	T	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.																																.	.					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.													.	160	.	.
		140
Predicted Secondary structure
Query SS confidence
Query Sequence		C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		163

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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