Job Description P0A812 Confidence 99.60% Date Thu Jan 5 11:06:35 GMT 2012 Rank 85 Aligned Residues 208 % Identity 18% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.				.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																		.	.	.																							.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.																							.	.	.	.	.	.	.
Query Sequence		Y	V	G	Q	P	Q	V	R	S	Q	M	E	I	F	I	K	A	A	K	L	R	G	D	A	L	D	H	L	L	I	F	G	P	P	G	L	G	K	T	T	L	A	N	I	V	A	N	E	.	.	.	M	G	V	N	L	R	T	T	S	G	P	V	L	E	K	A	G	D	L	A	A	M	.	.	.	.	.	.	.
Query Conservation																																																		.	.	.																							.	.	.	.	.	.	.
Alig confidence																				.	.	.																												.	.	.																							.	.	.	.	.	.	.
Template Conservation																				.	.	.
Template Sequence		Y	V	F	E	S	P	K	M	K	E	I	L	E	K	I	K	K	I	.	.	.	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S	I	P	R	D	I	F	E	A	E	L	F	G	Y	E	K	G	A
Template Known Secondary structure						S														.	.	.	T	T			S							S	T	T	S	S												S	T	T	T	T	S							T	T	T	S												B		T	T	S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
												101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	L	T	N	L	E	P	H	D	V	L	F	I	D	E	I	H	R	L	S	P	V	V	E	E	V	L	Y	P	A	M	E	D	Y	Q	L	D	I	M	I	G	E	G	P	A	A	R	S	I	K	I	D	L	P	P	F	T	L	I	G	A	T	T	R	A	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.
Template Sequence		F	T	G	A	V	S	S	K	E	G	F	F	E	L	A	D	G	G	T	L	F	L	D	E	I	G	E	L	S	L	E	A	Q	A	K	L	L	R	V	I	E	S	G	K	F	Y	R	L	G	G	R	.	.	.	.	.	.	.	K	E	I	E	V	N	V	R	I	L	A	A	T	N	R	N	I	K	E	L	V	K
Template Known Secondary structure		S	T	T			S		B							T	T	T	S						S	G	G	G																S					B	T			.	.	.	.	.	.	.	S													S	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.								.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
				165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.								200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.																							.	.														.	.	.	.	.	.	.																	.
Query SS confidence		.	.																							.	.														.	.	.	.	.	.	.																	.
Query Sequence		.	.	G	S	L	T	S	P	L	R	D	R	F	G	I	V	Q	R	L	E	F	Y	Q	V	.	.	P	D	L	Q	Y	I	V	S	R	S	A	R	F	.	.	.	.	.	.	.	M	G	L	E	M	S	D	D	G	A	L	E	V	A	R	R	.	A	R	G	T	P	R	I	A	N	R	L	L	R	R	V	R	D
Query Conservation		.	.																							.	.														.	.	.	.	.	.	.																	.
Alig confidence		.	.																							.	.														.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		E	G	K	F	R	E	D	L	Y	Y	R	L	G	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D	I	I	P	L	A	N	H	F	L	K	K	F	S	R	K	Y	A	K	E	V	E	G	F	T	K	S	A	Q	E	L	L	L	S	Y	P	W	Y	G	N	V	R	E	L	K	N	V	I	E	R	A	V	L
Template Known Secondary structure		T	T	S	S									T	T								G	G	G																				T	T																	S			T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	E	V	K	H	D	G	T	I	S	A	D	I	A	A	Q	A	L
Query Conservation
Alig confidence					.	.	.
Template Conservation					.	.	.
Template Sequence		F	S	E	.	.	.	G	K	F	I	D	R	G	E	L	S	C	L	V
Template Known Secondary structure					.	.	.	S	S
Template Predicted Secondary structure					.	.	.
Template SS confidence
		369	370	.				.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions