Phyre 2 alignment of P31453 with c2kkoB

Job Description P31453
Confidence 94.56% Date Thu Jan 5 11:47:45 GMT 2012

Rank 146 Aligned Residues 51

% Identity 20% Template c2kkoB_

PDB info PDB header:dna binding protein Chain: B: PDB Molecule:possible transcriptional regulatory protein PDBTitle: solution nmr structure of the homodimeric winged helix-turn-2 helix dna-binding domain (fragment 1-100) mb0332 from3 mycobacterium bovis, a possible arsr-family transcriptional4 regulator. northeast structural genomics consortium target5 mbr242e.

Resolution UNK

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence	R	L	R	I	R	L	N	S	A	D	F	T	L	N	S	L	L	P	G	E	K	K	L	A	E	E	F	A	V	S	R	M	T	I	R	K	A	I	D	L	L	V	A	W	G	L	V	V	R	R	H	.	G	S	G	T	Y	L	V
Query Conservation																																																				.
Alig confidence												.	.	.	.	.	.	.																																		.
Template Conservation												.	.	.	.	.	.	.
Template Sequence	Q	I	L	D	L	L	A	Q	G	E	R	.	.	.	.	.	.	.	A	V	E	A	I	A	T	A	T	G	M	N	L	T	T	A	S	A	N	L	Q	A	L	K	S	G	G	L	V	E	A	R	R	E	G	T	R	Q	Y	Y	R
Template Known Secondary structure							T	T				.	.	.	.	.	.	.										T																	T	S							T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.
Template SS confidence
	29	30	.	.	.	.	.	.	.	.	.								40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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