Job Description P04335 Confidence 100.00% Date Thu Jan 5 10:58:13 GMT 2012 Rank 3 Aligned Residues 340 % Identity 14% Template c3fnbB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:acylaminoacyl peptidase smu_737; PDBTitle: crystal structure of acylaminoacyl peptidase smu_737 from2 streptococcus mutans ua159 Resolution 2.12 Å

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		48	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.				.	.	.	.	120	.	.	.
Predicted Secondary structure											.																																																												.	.	.
Query SS confidence											.																																																												.	.	.
Query Sequence		Y	R	M	I	N	R	L	M	W	.	I	W	R	G	I	D	P	R	E	I	L	D	V	Q	A	R	I	V	M	S	D	A	E	R	T	D	D	D	L	Y	D	T	V	I	G	Y	R	G	G	N	W	I	Y	E	W	A	T	Q	A	M	V	W	Q	Q	K	A	C	A	E	.	.	.	D	D	P	Q	L	S	G	R
Query Conservation											.																																																												.	.	.
Alig confidence											.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	C	F	N	W	X	L	G	I	G	Q	I	I	G	X	S	A	G	E	L	F	Y	I	A	S	G	I	R	D	G	N	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	C	K	R	F	N	E	H	A	D	Y	L	E	D	E	V	E	R	V	K	K	V	G	Y	R	D	L	I	S	H
Template Known Secondary structure												T	T	S	S											T	T			T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	W	L	H	A	A	T	L	Y	N	I	A	A	Y	P	H	L	K	G	D	D	L	A	E	Q	A	Q	A	L	S	N	R	A	Y	E	E	A	A	Q	R	L	P	G	T	M	R	Q	M	E	F	T	V	P	G	G	A	P	I	T	G	F	L	H	M	P	K	G	D	G	P	F	P	T	V	L	M	C	G	G	L
Query Conservation
Alig confidence																																																							.														.
Template Conservation																																																							.														.
Template Sequence		L	Y	F	S	A	C	F	S	I	R	A	A	L	Q	F	T	D	P	K	D	S	E	F	X	E	N	F	R	R	X	E	K	L	F	X	L	A	V	D	N	S	K	I	P	L	K	S	I	E	V	P	F	E	.	G	E	L	L	P	G	Y	A	I	I	S	E	D	.	K	A	Q	D	T	L	I	V	V	G	G	G
Template Known Secondary structure																T			T	T	S	T																			T	S	S											T	.	T											S	S	.												S
Template Predicted Secondary structure																																																							.														.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		D	A	M	Q	T	D	Y	Y	S	L	Y	E	R	Y	F	A	P	R	G	I	A	M	L	T	I	D	M	P	S	V	G	F	S	S	.	.	K	W	K	L	T	Q	D	S	S	L	L	H	Q	H	V	L	K	A	L	P	N	V	P	W	V	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R
Query Conservation																																				.	.
Alig confidence																																				.	.																				.	.	.	.
Template Conservation																																																									.	.	.	.
Template Sequence		D	T	S	R	E	D	L	F	Y	X	L	G	Y	S	G	W	E	H	D	Y	N	V	L	X	V	D	L	P	G	Q	G	K	N	P	N	Q	G	L	H	F	E	V	D	A	R	A	A	I	S	A	I	L	D	W	Y	.	.	.	.	Q	A	P	T	E	K	I	A	I	A	G	F	S	G	G	G	Y	F	T	A	Q
Template Known Secondary structure		S										T							T	T									T	T	S	T	T	G	G	G	G	T					S		S												.	.	.	.			S	S	S								T	T
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220					.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	Y	L	E	S	P	R	L	K	A	V	A	C	L	G	P	V	V	H	T	L	L	S	D	F	K	C	Q	Q	Q	V	P	E	M	Y	L	D	V	L	A	S	R	L	G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	T	P	M	L	S	G
Query Conservation
Alig confidence								.																																																											.	.	.
Template Conservation								.																																																											.	.	.
Template Sequence		A	V	E	K	D	K	.	R	I	K	A	W	I	A	S	T	P	I	Y	D	V	A	E	V	F	R	I	S	F	S	V	N	K	V	A	E	V	N	L	N	K	Y	A	W	Q	F	G	Q	V	D	F	I	T	S	V	N	E	V	L	E	Q	A	Q	I	V	.	.	.	D	Y	N	K	I	D	V	P	S	L	F	L
Template Known Secondary structure							T	.	T								S			S										T																		T	S	S																	.	.	.		G	G	G			S
Template Predicted Secondary structure								.																																																											.	.	.
Template SS confidence
		242	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.					.	.	.	.	.	.	.	.	390							.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																						.	.	.	.										.	.	.	.	.	.
Query SS confidence																						.	.	.	.										.	.	.	.	.	.
Query Sequence		Y	W	K	N	D	P	F	S	P	E	E	D	S	R	L	I	T	S	S	S	.	.	.	.	A	D	G	K	L	L	E	I	P	.	.	.	.	.	.	F	N	P	V	Y	R	N	F	D	K	G	L	Q	E	I	T	D	W	I	E	K	R	L
Query Conservation																						.	.	.	.										.	.	.	.	.	.
Alig confidence																						.	.	.	.										.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	A	G	E	D	S	E	L	X	R	Q	S	Q	V	L	Y	D	N	F	K	Q	R	G	I	D	V	T	L	R	K	F	S	S	E	S	G	A	D	A	H	C	Q	V	N	N	F	R	L	X	H	Y	Q	V	F	E	W	L	N	H	I	F
Template Known Secondary structure				S	S	S																		T	T										T	T	T	T			S	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions