Job Description P04335 Confidence 99.40% Date Thu Jan 5 10:58:13 GMT 2012 Rank 218 Aligned Residues 197 % Identity 12% Template c3ds8A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua Resolution 1.80 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.															.	.	.	.	.	.	.	.	230	.	.	.	.	.	.									.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query Sequence		V	L	M	C	G	G	L	D	A	M	Q	T	D	Y	Y	S	L	Y	E	R	Y	F	A	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	A	M	L	T	I	D	M	P	S	V	G	F	S	.	.	.	.	.	.	.	.	S	K	W	K	L	T	Q	D	S	S	L	L	H	Q	H	V	L	K
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	L	I	H	G	S	G	G	N	A	S	S	L	D	K	X	A	D	Q	L	X	N	E	Y	R	S	S	N	E	A	L	T	X	T	V	N	S	E	G	K	I	K	F	E	G	K	L	T	K	D	A	K	R	P	I	I	K	F	G	F	E	Q	N	Q	A	T	P	D	D	W	S	K	W	L	K	I	A	X	E
Template Known Secondary structure								T	T			T	T	T	T										T	T													T	T	T						S				T	T		S	S								S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		A	L	P	N	V	P	W	V	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R	L	A	Y	L	E	S	P	.	.	.	.	.	R	L	K	A	V	A	C	L	G	P	V	V	H	T	L	L	S	D	F	K	C	Q	Q	Q	V	P	E	M	Y	L	D	V	L	A	S	R	L	G	M	H	D
Query Conservation																																				.	.	.	.	.
Alig confidence										.	.																									.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.																																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	K	S	R	Y	G	F	.	.	T	Q	X	D	G	V	G	H	S	N	G	G	L	A	L	T	Y	Y	A	E	D	Y	A	G	D	K	T	V	P	T	L	R	K	L	V	A	I	G	S	P	F	N	D	L	D	.	.	.	.	.	.	.	.	.	.	.	P	N	D	N	G	X	D	L	S	F	K	K	L	P
Template Known Secondary structure										.	.	S								T													S	T	T		T	T	S										S			T	T		S		.	.	.	.	.	.	.	.	.	.	.						S		T	T		S	S		S
Template Predicted Secondary structure										.	.																																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.												.	140	.	.	.	.	.	.	.	.	.	150	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.							.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.							.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.																					.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.																					.	.	.	.	.	.
Query Sequence		A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	T	P	M	L	S	G	Y	W	K	.	.	.	.	.	.	N	D	P	F	S	P	E	E	D	S	R	L	I	T	S	S	S	A	D	G	.	.	.	.	.	.	K	L	L	E	I	P	F	N	P	V	Y	R	N
Query Conservation																																					.	.	.	.	.	.																					.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.											.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.
Template Sequence		N	S	T	P	Q	X	D	Y	F	I	K	N	Q	T	E	V	S	P	.	.	.	.	.	.	.	D	L	E	V	L	A	I	A	G	E	L	S	E	D	N	P	T	D	G	I	V	P	T	I	S	S	L	A	T	R	L	F	X	P	G	S	A	K	A	Y	I	E	D	I	Q	V	G	E	D	A	V	H	Q	T	L
Template Known Secondary structure		S											T	G	G	G	S		T	.	.	.	.	.	.	.	T										S	B	T	T	B		B		S	S	S	B					T	G	G	G	G	T	S	B	T	T	B	S									S	G	G	G		G	G	G	G
Template Predicted Secondary structure																				.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170								.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		398			.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		F	.	.	D	K	G	L	Q	E	I	T	D	W	I	E	K	R	L
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		H	E	T	P	K	S	I	E	K	T	Y	W	F	L	E	K	F	K
Template Known Secondary structure		G	G	S													T
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions