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Job DescriptionP04335
Confidence99.79%DateThu Jan 5 10:58:13 GMT 2012
Rank143Aligned Residues218
% Identity9%Templatec3dqzB_
PDB info PDB header:lyaseChain: B: PDB Molecule:alpha-hydroxynitrile lyase-like protein; PDBTitle: structure of the hydroxynitrile lyase from arabidopsis2 thaliana
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   193......200.........210.........220.........230.........240.........250.........260.........270..
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Query Sequence  PFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGF
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Template Sequence  RKHHFVLVHNAYHGA. WIWYKLKPLLESAGHRVTAVELAASGIDPRPIQAVETVDEYSKPLIETLKSLPEN. EEVILVGF
Template Known Secondary structure 




TT

G.GGGTTTT


TTSTT
SS
GGG

STS
TT.

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   3......10....... ..20.........30.........40.........50.........60.........70.. .......80
 
   273......280.........290.........300.........310....... ..320.......
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Query Sequence  RFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMY. . . . . . . . . . . . . . . . . . . . . . . . . LDVLASRLGM
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Template Sequence  SFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKFMKARLYQ
Template Known Secondary structure  TTTT
GGGS




SSS
TTTSTT

TT
TT

TST
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   328.330.........340.........350.. .......360.........370.........380.........390.....
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Query Sequence  HDASDEALRVELNRYSLKVQGLLGR. . . . . . . . . RCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVY. . .
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Template Sequence  NCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNVSKVYEIDGGDHMVML
Template Known Secondary structure  TS
TT




TS



TTTGGGSTT
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S

S
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S
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   396...400.........410..
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Query Sequence  RNFDKGLQEITDWIEKR
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Template Sequence  SKPQKLFDSLSAIATDY
Template Known Secondary structure  S
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   241........250.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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