Job Description P04335 Confidence 99.84% Date Thu Jan 5 10:58:13 GMT 2012 Rank 107 Aligned Residues 182 % Identity 21% Template c3d59B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:platelet-activating factor acetylhydrolase; PDBTitle: crystal structure of human plasma platelet activating2 factor acetylhydrolase Resolution 1.50 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	K	G	D	G	P	F	P	T	V	L	M	C	G	G	L	D	A	M	Q	T	D	Y	Y	S	L	Y	E	R	Y	F	A	P	R	G	I	A	M	L	T	I	D	M	P	S	V	G	F	S	S	K	W	K	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.
Template Sequence		L	R	P	G	E	K	Y	P	L	V	V	F	S	H	G	L	G	A	F	R	T	L	Y	.	S	A	I	G	I	D	L	A	S	H	G	F	I	V	A	A	V	E	H	R	D	R	S	A	S	A	T	Y	Y	F	K	D	Q	S	A	A	E	I	G	D	K	S	W	L	Y	L	R	T	L	K	Q	E	E	E	T	H
Template Known Secondary structure		B			S												T	T			T	T	T	T	.										T	T										S	S		S	S						S	S						T	T
Template Predicted Secondary structure																									.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
								243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.																					.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	Q	D	S	S	L	L	H	Q	H	V	L	K	A	L	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	W	V	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R	L	A	Y	L	E	S	P	R	L	K	A	V	A	C	L
Query Conservation		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation																																																																									.
Template Sequence		I	R	N	E	Q	V	R	Q	R	A	K	E	C	S	Q	A	L	S	L	I	L	D	I	D	H	G	K	P	V	K	N	A	L	D	L	K	F	D	M	E	Q	L	K	D	S	I	D	R	E	K	I	A	V	I	G	H	S	F	G	G	A	T	V	I	Q	T	L	S	E	D	Q	.	R	F	R	C	G	I	A	L
Template Known Secondary structure																										T	T						S	S			S			G	G	G	G	T	T													T														T	.	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		G	P	V	V	H	T	L	L	S	D	F	K	C	Q	Q	Q	V	P	E	M	Y	L	D	V	L	A	S	R	L	G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	T	P	M	L	S	G	Y	W	K	N	D	P	F	S	P	E	E	D	S	.	R
Query Conservation																																																																																.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	M	F	P	L	G	D	E	V	Y	S	R	I	P	Q	P	L	F	F	I	N	S	E	Y	F	Q	Y	P	A	N	I	I	K	M	K
Template Known Secondary structure		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S		T	T	G	G	G				S								S	S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		296	.																																												.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.																											400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	T	S	S	S	A	D	G	K	L	L	E	I	P	F	N	P	V	Y	R	N	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	L	Q	E	I	T	D	W	I	E	K	R	L	C
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	C	Y	S	P	D	K	E	R	K	M	I	T	I	R	G	S	V	H	Q	N	F	A	D	F	T	F	A	T	G	K	I	I	G	H	M	L	K	L	K	G	D	I	D	S	N	V	A	I	D	L	S	N	K	A	S	L	A	F	L	Q	K	H	L	G
Template Known Secondary structure			T			T	T	S								T	T			G	G	G	G	S	G	G	G	G	T	S								T	T	S	S		S	S																						T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions