Job Description P04335 Confidence 98.58% Date Thu Jan 5 10:58:13 GMT 2012 Rank 243 Aligned Residues 205 % Identity 14% Template c3biwD_ PDB info PDB header:cell adhesion/cell adhesion Chain: D: PDB Molecule:neuroligin-1; PDBTitle: crystal structure of the neuroligin-1/neurexin-1beta synaptic adhesion2 complex Resolution 3.50 Å

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		181	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.					.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.
Predicted Secondary structure												.	.	.																																	.										.	.	.	.															.
Query SS confidence												.	.	.																																	.										.	.	.	.															.
Query Sequence		I	T	G	F	L	H	M	P	K	G	.	.	.	D	G	P	F	P	T	V	L	M	C	G	G	L	D	A	M	Q	T	D	Y	Y	S	L	Y	E	R	Y	F	A	P	R	G	.	I	A	M	L	T	I	D	M	P	.	.	.	.	S	V	G	F	S	S	K	W	K	L	T	Q	D	S	.	S	L	L	H	Q	H
Query Conservation												.	.	.																																	.										.	.	.	.															.
Alig confidence												.	.	.																																	.										.	.	.	.															.
Template Conservation
Template Sequence		L	Y	L	N	I	Y	V	P	T	I	R	D	S	G	G	P	K	P	V	M	V	Y	I	H	G	G	S	Y	M	E	G	T	G	N	L	Y	D	G	S	V	L	A	S	Y	G	N	V	I	V	I	T	V	N	Y	R	L	G	V	L	G	F	L	S	T	G	D	Q	A	A	K	G	N	Y	G	L	L	D	L	I	Q
Template Known Secondary structure													S			S											S	S	S	S	S			T	T	T	S										T																	B		S	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		252	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure													.	.	.																									.	.	.
Query SS confidence													.	.	.																									.	.	.
Query Sequence		V	L	K	A	L	P	N	V	P	W	V	.	.	.	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R	L	A	Y	L	E	.	.	.	S	P	R	L	K	A	V	A	C	L	G	P	V	V	H	T	L	L	S	D	F	K	C	Q	Q	Q	V	P	E	M	Y	L	D	V	L	A	S	R	L
Query Conservation													.	.	.																									.	.	.
Alig confidence													.	.	.																									.	.	.																						.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		A	L	R	W	T	S	E	N	I	G	F	F	G	G	D	P	L	R	I	T	V	F	G	S	G	A	G	G	S	C	V	N	L	L	T	L	S	H	Y	S	E	K	G	L	F	Q	R	A	I	A	Q	S	G	T	A	L	S	S	W	A	V	S	.	.	.	.	F	Q	P	A	K	Y	A	R	I	L	A	T	K	V
Template Known Secondary structure										G	G	G	G	T												T										T	T	S	T	T	S		T	T	S								T			S	S	S	T	T	S	S		.	.	.	.	S													T
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.					.	320	.	.	.	.	.	.	.	.	.	330	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	T	P	M	L	S	G	Y	W	K	.	N	D	P	F	S	P	E	E	D	S	R	L	I	T	S	S	S	A	D	G	K	L	L	E	I
Query Conservation																																									.
Alig confidence																																									.
Template Conservation
Template Sequence		G	C	N	V	S	D	T	V	E	L	V	E	C	L	Q	K	K	P	Y	K	E	L	V	D	Q	D	V	Q	P	A	R	Y	H	I	A	F	G	P	V	I	D	G	D	V	I	P	D	D	P	Q	I	L	M	E	Q	G	E	F	L	N	Y	D	I	M	L
Template Known Secondary structure		S				S	S									T	T	S						T	T	S						T	T	S		S	S	S					S	S	S	S		S								T	T		S
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions