Job Description P04335 Confidence 99.77% Date Thu Jan 5 10:58:13 GMT 2012 Rank 158 Aligned Residues 239 % Identity 10% Template c2zshA_ PDB info PDB header:hormone receptor Chain: A: PDB Molecule:probable gibberellin receptor gid1l1; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor Resolution 1.80 Å

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		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190																		.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																			.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																			.
Query Sequence		M	R	Q	M	E	F	T	V	P	G	G	A	P	I	T	G	F	L	H	M	P	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	P	F	P	T	V	L	M	C	G	G	L	.	.	.	.	D	A	M	Q	T	D	Y	Y	S	L	Y	E	R	Y	F	A	P	R	.	G	I	A	M
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																			.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																			.
Template Conservation
Template Sequence		V	F	S	F	D	V	L	I	D	R	R	I	N	L	L	S	R	V	Y	R	P	A	Y	A	D	Q	E	Q	P	P	S	I	L	D	L	E	K	P	V	D	G	D	I	V	P	V	I	L	F	F	H	G	G	S	F	A	H	S	S	A	N	S	A	I	Y	D	T	L	C	R	R	L	V	G	L	C	K	C	V	V
Template Known Secondary structure											T	T	T	T											T	T		S	S				T	T	S	T	T					S	S	S										S	T	T	T	S			T	T	B															T	S
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.																														.	.	.
Query SS confidence																																					.	.	.	.	.																														.	.	.
Query Sequence		L	T	I	D	M	P	S	V	G	F	S	S	K	W	K	L	T	Q	D	S	S	L	L	H	Q	H	V	L	K	A	L	P	N	V	P	.	.	.	.	.	W	V	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R	L	A	Y	L	E	S	P	R	.	.	.	L	K	A	V	A	C	L	G
Query Conservation																																					.	.	.	.	.																														.	.	.
Alig confidence															.	.	.	.																			.	.	.	.	.																														.	.	.
Template Conservation															.	.	.	.
Template Sequence		V	S	V	N	Y	R	R	A	P	E	N	P	Y	.	.	.	.	P	C	A	Y	D	D	G	W	I	A	L	N	W	V	N	S	R	S	W	L	K	S	K	K	D	S	K	V	H	I	F	L	A	G	D	S	S	G	G	N	I	A	H	N	V	A	L	R	A	G	E	S	G	I	D	V	L	G	N	I	L	L	N
Template Known Secondary structure									T	T	T	S		T	.	.	.	.	T															T		G	G	G			T	T	T	S	S									T															T	T	T										S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																.	.																																																																.
Query SS confidence																.	.																																																																.
Query Sequence		P	V	V	H	T	L	L	S	D	F	K	C	Q	Q	.	.	Q	V	P	E	M	Y	L	D	V	L	A	S	R	L	G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	T	P	M	L	S	G	Y	W	K	N	D	P	F	S	P	E	E	D	S	.
Query Conservation																.	.																																																																.
Alig confidence																.	.																																																																.
Template Conservation
Template Sequence		P	M	F	G	G	N	E	R	T	E	S	E	K	S	L	D	G	K	Y	F	V	T	V	R	D	R	D	W	Y	W	K	A	F	L	P	E	G	E	D	R	E	H	P	A	C	N	P	F	S	P	R	G	K	S	L	E	G	V	S	F	P	K	S	L	V	V	V	A	G	L	D	L	I	R	D	W	Q	L	A	Y
Template Known Secondary structure							S	S									T	T	T	S	S														S		T	T			T	T	S	T	T	T		T	T	S	T	T	S				T	T												T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
			375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.								.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure		.																					.	.	.	.	.	.	.
Query SS confidence		.																					.	.	.	.	.	.	.
Query Sequence		.	R	L	I	T	S	S	S	A	D	G	K	L	L	E	I	P	F	N	P	V	.	.	.	.	.	.	.	Y	R	N	F	D	K	G	L	Q	E	I	T	D	W	I	E
Query Conservation		.																					.	.	.	.	.	.	.
Alig confidence		.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	G	L	K	K	A	G	Q	E	V	K	L	M	H	L	E	K	A	T	V	G	F	Y	L	L	P	N	N	N	H	F	H	N	V	M	D	E	I	S	A	F	V	N
Template Known Secondary structure								T	T									T	T			T	T	T	T	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions