Job Description P04335 Confidence 99.88% Date Thu Jan 5 10:58:13 GMT 2012 Rank 74 Aligned Residues 239 % Identity 13% Template c2yysA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:proline iminopeptidase-related protein; PDBTitle: crystal structure of the proline iminopeptidase-related protein2 ttha1809 from thermus thermophilus hb8 Resolution 2.20 Å

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		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	M	E	F	T	V	P	G	G	A	P	I	T	G	F	L	H	M	P	K	G	D	G	P	F	P	T	V	L	M	C	G	G	L	D	A	M	Q	T	D	Y	Y	S	L	Y	E	R	Y	F	A	P	R	G	I	A	M	L	T	I	D	M	P	S	V	G	F	S	S	K	W	K	L	T	Q	D	S	S	L	L
Query Conservation
Alig confidence																									.	.	.																									.
Template Conservation																									.	.	.																									.
Template Sequence		E	E	I	G	Y	V	P	V	G	E	A	E	L	Y	V	E	D	V	G	P	V	E	G	.	.	.	P	A	L	F	V	L	H	G	G	P	G	G	N	A	Y	V	L	R	E	G	L	Q	D	Y	.	L	E	G	F	R	V	V	Y	F	D	Q	R	G	S	G	R	S	L	E	L	P	Q	D	P	R	L	F	T	V
Template Known Secondary structure										S	S									S		T	T	S	.	.	.									T	T	T			S								G	G	G	.		T	T	S								T	T	S	T	T	S					S		G	G	G
Template Predicted Secondary structure																									.	.	.																									.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	Q	H	V	L	K	A	L	P	N	V	P	W	V	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R	L	A	Y	L	E	S	P	R	L	K	A	V	A	C	L	G	P	V	V	H	T	L	L	S	D	F	K	C	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	L	V	E	D	T	L	L	L	A	E	A	L	G	V	E	R	F	G	L	L	A	H	G	F	G	A	V	V	A	L	E	V	L	R	R	F	P	Q	A	E	G	A	I	L	L	A	P	W	V	N	F	P	W	L	A	A	R	L	A	E	A	A	G	L	A	P	L	P	D	P	E	E	N	L	K	E	A	L
Template Known Secondary structure															T	T			S							T	T													T	T								S				B												T	T					S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
																	311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	V	P	E	M	Y	L	D	V	L	A	S	R	L	G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	T	P	M	L	S	G	Y	W	K	N	D	P	F	S	P	E	E	D	S	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	E	E	P	K	A	L	F	D	R	L	M	F	P	T	P	R	G	R	M	A	Y	E	W	L	A	E	G	A	G	I	L	G	S	D	A	P	G	L	A	F	L	R	N	G	L	W	R	L	D	Y	T	P	Y	L	T	P	E	R	R	P	L	Y	V	L	V	G	E	R	D	G	T	S	Y	P	Y	A	E	E
Template Known Secondary structure				S												S	S														T	T					S									T	T	G	G	G		B		G	G	G					S	S								T	T		T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.				.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		L	I	T	S	S	S	A	D	G	K	L	L	E	I	P	F	N	P	V	Y	.	.	.	R	N	F	D	K	G	L	Q	E	I	T	D	W	I	E	K	R	L
Query Conservation																						.	.	.
Alig confidence						.	.															.	.	.
Template Conservation						.	.
Template Sequence		V	A	S	R	.	.	L	R	A	P	I	R	V	L	P	E	A	G	H	Y	L	W	I	D	A	P	E	A	F	E	E	A	F	K	E	A	L	A	A	L	V
Template Known Secondary structure						.	.		T							T	T			S	S																			T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		239	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions