Job Description P04335 Confidence 99.97% Date Thu Jan 5 10:58:13 GMT 2012 Rank 12 Aligned Residues 243 % Identity 13% Template c2qtbB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:dipeptidyl peptidase 4; PDBTitle: human dipeptidyl peptidase iv/cd26 in complex with a 4-aryl2 cyclohexylalanine inhibitor Resolution 2.25 Å

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		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.					.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.																	.	.	.	.
Query SS confidence																																						.	.	.																	.	.	.	.
Query Sequence		R	A	Y	E	E	A	A	Q	R	L	P	G	T	M	R	Q	M	E	F	T	V	P	G	G	A	P	I	T	G	F	L	H	M	P	K	G	.	.	.	D	G	P	F	P	T	V	L	M	C	G	G	L	D	A	M	.	.	.	.	Q	T	D	Y	Y	S	L	Y	E	R	Y	F	A	P	R	G	I	A	M	L	T
Query Conservation																																						.	.	.																	.	.	.	.
Alig confidence																																						.	.	.																	.	.	.	.
Template Conservation
Template Sequence		S	A	L	D	K	M	L	Q	N	V	Q	M	P	S	K	K	L	D	F	I	I	L	N	E	T	K	F	W	Y	Q	M	I	L	P	P	H	F	D	K	S	K	K	Y	P	L	L	L	D	V	Y	A	G	P	C	S	Q	K	A	D	T	V	F	R	L	N	W	A	T	Y	L	A	S	T	E	N	I	I	V	A	S
Template Known Secondary structure									T	T														T	T											T	T			T	T	S												T	T											S								T	T
Template Predicted Secondary structure
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.								.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																				.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.
Query Sequence		I	D	M	P	S	V	G	F	S	S	K	W	K	L	T	Q	D	S	.	.	.	.	.	.	.	S	L	L	H	Q	H	V	L	K	A	L	P	N	V	P	W	V	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R	L	A	Y	L	E	S	P	R	L	K	A	V	A	C	L	G	P	V	V
Query Conservation																				.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	D	G	R	G	S	G	Y	Q	G	D	K	I	M	H	A	I	N	R	R	L	G	T	F	E	V	E	D	Q	I	E	A	A	R	Q	F	S	K	M	G	F	V	D	N	K	R	I	A	I	W	G	W	S	Y	G	G	Y	V	T	S	M	V	L	G	S	G	S	G	V	F	K	C	G	I	A	V	A	P	V	S
Template Known Secondary structure					T	T		S	S	S						G	G	G	T	T		T	T	S															T	T	S	S												T											T	T	T		S			S						S
Template Predicted Secondary structure
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.					.
Predicted Secondary structure																																																									.																				.	.	.	.
Query SS confidence																																																									.																				.	.	.	.
Query Sequence		H	T	L	L	S	D	F	K	C	Q	Q	Q	V	P	E	M	Y	L	D	V	L	A	S	R	L	G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	.	T	P	M	L	S	G	Y	W	K	N	D	P	F	S	P	E	E	D	S	.	.	.	.	R
Query Conservation																																																									.																				.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.						.																				.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Sequence		R	W	E	Y	Y	D	S	V	Y	T	E	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	M	G	L	P	T	P	E	D	N	L	D	H	Y	R	N	S	T	V	M	S	R	.	.	.	.	A	E	N	F	K	Q	V	E	Y	L	L	I	H	G	T	A	D	D	N	V	H	F	Q	Q	S	A	Q	I	S	K
Template Known Secondary structure			G	G	G	S	B						.	.	.	.	.	.	.	.	.	.	.	.						S	S	T	T	T	T							S		S	G	G	G	.	.	.	.	G	G	G	G	G	G	S								T	T		S	S	S		T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template SS confidence
		658	.	660	.	.	.	.	.	.	.	.													.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.					.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.					.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence		L	I	T	S	S	S	A	D	G	K	L	L	E	I	P	F	N	P	V	Y	R	N	F	D	K	G	L	.	.	.	.	Q	E	I	T	D	W	I	E	K	R	L
Query Conservation																													.	.	.	.
Alig confidence																													.	.	.	.
Template Conservation
Template Sequence		A	L	V	D	V	G	V	D	F	Q	A	M	W	Y	T	D	E	D	H	G	I	A	S	S	T	A	H	Q	H	I	Y	T	H	M	S	H	F	I	K	Q	C	F
Template Known Secondary structure						T	T									T	T			T	T			S																			T
Template Predicted Secondary structure
Template SS confidence
		722	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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