Job Description P04335 Confidence 100.00% Date Thu Jan 5 10:58:13 GMT 2012 Rank 5 Aligned Residues 235 % Identity 19% Template c2ecfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl peptidase iv; PDBTitle: crystal structure of dipeptidyl aminopeptidase iv from2 stenotrophomonas maltophilia Resolution 2.80 Å

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		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.								.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.														.	.	.																			.	.	.	.	.	.	.
Query SS confidence																			.														.	.	.																			.	.	.	.	.	.	.
Query Sequence		A	Q	R	L	P	G	T	M	R	Q	M	E	F	T	V	P	G	.	G	A	P	I	T	G	F	L	H	M	P	K	G	.	.	.	D	G	P	F	P	T	V	L	M	C	G	G	L	D	A	M	Q	T	.	.	.	.	.	.	.	D	Y	Y	S	L	Y	E	R	Y	F	A	P	R	G	I	A	M	L	T	I	D
Query Conservation																			.														.	.	.																			.	.	.	.	.	.	.
Alig confidence																			.														.	.	.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	R	E	A	Q	R	P	V	E	F	G	T	L	T	A	A	D	G	K	T	P	L	N	Y	S	V	I	K	P	A	G	F	D	P	A	K	R	Y	P	V	A	V	Y	V	Y	G	G	P	A	S	Q	T	V	T	D	S	W	P	G	R	G	D	H	L	F	N	Q	Y	L	A	Q	Q	G	Y	V	V	F	S	L	D
Template Known Secondary structure				T	T												T	T	S	S											S	S			T	T	S											S	T	T			S		S	S					S												T	T
Template Predicted Secondary structure
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
		230	.	.	.	.	.								.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure								.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.
Query Sequence		M	P	S	V	G	F	.	.	.	.	.	.	.	S	S	K	W	K	L	T	Q	D	S	S	L	L	H	Q	H	V	L	K	A	L	P	N	V	P	W	V	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R	L	A	Y	L	E	S	P	R	L	K	A	V	A	C	L	G	P	V	V	H	T
Query Conservation								.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	R	G	T	P	R	R	G	R	D	F	G	G	A	L	Y	G	K	Q	G	T	V	E	V	A	D	Q	L	R	G	V	A	W	L	K	Q	Q	P	W	V	D	P	A	R	I	G	V	Q	G	W	S	N	G	G	Y	M	T	L	M	L	L	A	K	A	S	D	S	Y	A	C	G	V	A	G	A	P	V	T	D	W
Template Known Secondary structure			T	T		S	S	S							T	T	T	T		T	T	T															T	S	T	T												T														T	T	T		S						S					G
Template Predicted Secondary structure
Template SS confidence
		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.					.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.
Query SS confidence																																																																										.	.	.	.
Query Sequence		L	L	S	D	F	K	C	Q	Q	Q	V	P	E	M	Y	L	D	V	L	A	S	R	L	G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	T	P	M	L	S	G	Y	W	K	N	D	P	F	S	P	E	E	D	S	.	.	.	.	R	L	I	T
Query Conservation																																																																										.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.																									.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Sequence		G	L	Y	D	S	H	Y	T	E	.	.	.	.	.	.	.	.	.	.	.	R	Y	M	D	L	P	A	R	N	D	A	G	Y	R	E	A	R	V	L	T	H	.	.	.	.	.	.	.	I	E	G	L	R	S	P	L	L	L	I	H	G	M	A	D	D	N	V	L	F	T	N	S	T	S	L	M	S	A	L	Q
Template Known Secondary structure		G	G	S	B						.	.	.	.	.	.	.	.	.	.	.						T	G	G	G									S	G	G	G	.	.	.	.	.	.	.	G	G	G			S								T	T		S	S	S		T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		640	.	.	.	.	.	.	.	.												.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.								670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.				400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		S	S	S	A	D	G	K	L	L	E	I	P	F	N	P	V	Y	R	N	F	D	.	.	.	K	G	L	Q	E	I	T	D	W	I	E	K	R	L
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		K	R	G	Q	P	F	E	L	M	T	Y	P	G	A	K	H	G	L	S	G	A	D	A	L	H	R	Y	R	V	A	E	A	F	L	G	R	C	L
Template Known Secondary structure			T	T									T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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