Job Description P04335 Confidence 99.95% Date Thu Jan 5 10:58:13 GMT 2012 Rank 25 Aligned Residues 236 % Identity 12% Template c2bklB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity Resolution 1.5 Å

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		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																											.	.	.																				.																											.	.	.	.	.	.
Query SS confidence																											.	.	.																				.																											.	.	.	.	.	.
Query Sequence		G	T	M	R	Q	M	E	F	T	V	P	G	G	A	P	I	T	G	F	L	H	M	P	K	G	.	.	.	D	G	P	F	P	T	V	L	M	C	G	G	L	D	A	M	Q	T	D	.	Y	Y	S	L	Y	E	R	Y	F	A	P	R	G	I	A	M	L	T	I	D	M	P	S	V	G	F	.	.	.	.	.	.
Query Conservation																											.	.	.																				.																											.	.	.	.	.	.
Alig confidence																											.	.	.																				.																											.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Q	V	E	Q	V	F	Y	A	S	K	D	G	T	K	V	P	M	F	V	V	H	R	K	D	L	K	R	D	G	N	A	P	T	L	L	Y	G	Y	G	G	F	N	V	N	M	E	A	N	F	R	S	S	I	L	P	W	L	D	A	G	G	V	Y	A	V	A	N	L	R	G	G	G	E	Y	G	K	A	W	H
Template Known Secondary structure												T	T	S											T	T				S	S												T	T									G	G	G						T	T									T	T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
			236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	S	S	K	W	K	L	T	Q	D	S	S	L	L	H	Q	H	V	L	K	A	L	P	N	V	P	W	V	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R	L	A	Y	L	E	S	P	R	L	K	A	V	A	C	L	G	P	V	V	H	T	L	L	S	D	F	K	C	Q	Q	Q	V	P
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		D	A	G	R	L	D	K	K	Q	N	V	F	D	D	F	H	A	A	A	E	Y	L	V	Q	Q	K	Y	T	Q	P	K	R	L	A	I	Y	G	G	S	N	G	G	L	L	V	G	A	A	M	T	Q	R	P	E	L	Y	G	A	V	V	C	A	V	P	L	L	D	M	V	R	Y	H	L	F	G	S	G	R	T	W
Template Known Secondary structure			T	T	S	G	G	G	T																	T	T	S			G	G	G							T														G	G	G		S						S					T	T	T	G	G	G	S	T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																												.	.																														.	.	.	.	.	.	.
Query SS confidence																																												.	.																														.	.	.	.	.	.	.
Query Sequence		E	M	Y	L	D	V	L	A	S	R	L	G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	T	.	.	P	M	L	S	G	Y	W	K	N	D	P	F	S	P	E	E	D	S	R	L	I	T	S	S	S	A	D	G	K	.	.	.	.	.	.	.
Query Conservation																																												.	.																														.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.																					.	.	.	.							.	.																														.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.																					.	.	.	.
Template Sequence		I	P	E	Y	.	.	.	.	.	.	.	.	G	T	A	E	K	P	E	D	F	K	T	L	H	A	Y	S	P	Y	H	H	.	.	.	.	V	R	P	D	V	R	Y	P	A	L	L	M	M	A	A	D	H	D	D	R	V	D	P	M	H	A	R	K	F	V	A	A	V	Q	N	S	P	G	N	P	A	T	A	L
Template Known Secondary structure						.	.	.	.	.	.	.	.			T	T	S												G	G	G		.	.	.	.			S	S												T	T		S	S	S		T												T	S	T	T			S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.																					.	.	.	.
Template SS confidence
		575	.	.	.									.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.					.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.						.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		L	L	E	I	P	F	N	P	V	Y	R	N	F	D	K	G	.	.	.	.	.	L	Q	E	I	T	D	W	I	E	K	R	L
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.
Template Conservation
Template Sequence		L	R	I	E	A	N	A	G	H	G	G	A	D	Q	V	A	K	A	I	E	S	S	V	D	L	Y	S	F	L	F	Q	V	L
Template Known Secondary structure						T	T		B	T	T	B		S																				T
Template Predicted Secondary structure
Template SS confidence
		643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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