Job Description P04335 Confidence 99.97% Date Thu Jan 5 10:58:13 GMT 2012 Rank 11 Aligned Residues 243 % Identity 12% Template c1z68A_ PDB info PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha Resolution 2.60 Å

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		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.																					.	.	.	.
Query SS confidence																																						.	.	.																					.	.	.	.
Query Sequence		R	A	Y	E	E	A	A	Q	R	L	P	G	T	M	R	Q	M	E	F	T	V	P	G	G	A	P	I	T	G	F	L	H	M	P	K	G	.	.	.	D	G	P	F	P	T	V	L	M	C	G	G	L	D	A	M	Q	T	D	Y	.	.	.	.	Y	S	L	Y	E	R	Y	F	A	P	R	G	I	A	M	L	T
Query Conservation																																						.	.	.																					.	.	.	.
Alig confidence																																						.	.	.																					.	.	.	.
Template Conservation
Template Sequence		K	E	L	E	N	A	L	K	N	I	Q	L	P	K	E	E	I	K	K	L	E	V	D	E	I	T	L	W	Y	K	M	I	L	P	P	Q	F	D	R	S	K	K	Y	P	L	L	I	Q	V	Y	G	G	P	C	S	Q	S	V	R	S	V	F	A	V	N	W	I	S	Y	L	A	S	K	E	G	M	V	I	A	L
Template Known Secondary structure								T	T	S	B													T	T											T	T			S	S	S												T	T	B																		T	T
Template Predicted Secondary structure
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
		228	.	230	.	.	.	.								.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure									.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.
Query Sequence		I	D	M	P	S	V	G	.	.	.	.	.	.	.	F	S	S	K	W	K	L	T	Q	D	S	S	L	L	H	Q	H	V	L	K	A	L	P	N	V	P	W	V	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R	L	A	Y	L	E	S	P	R	L	K	A	V	A	C	L	G	P	V	V
Query Conservation									.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	G	R	G	T	A	F	Q	G	D	K	L	L	Y	A	V	Y	R	K	L	G	V	Y	E	V	E	D	Q	I	T	A	V	R	K	F	I	E	M	G	F	I	D	E	K	R	I	A	I	W	G	W	S	Y	G	G	Y	V	S	S	L	A	L	A	S	G	T	G	L	F	K	C	G	I	A	V	A	P	V	S
Template Known Secondary structure					T	T	B	S	S	S						G	G	G	T	T		T	T																T	T	S													T											T	T	S	S	S			S						S
Template Predicted Secondary structure
Template SS confidence
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.					.
Predicted Secondary structure																																																									.																				.	.	.	.
Query SS confidence																																																									.																				.	.	.	.
Query Sequence		H	T	L	L	S	D	F	K	C	Q	Q	Q	V	P	E	M	Y	L	D	V	L	A	S	R	L	G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	.	T	P	M	L	S	G	Y	W	K	N	D	P	F	S	P	E	E	D	S	.	.	.	.	R
Query Conservation																																																									.																				.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.						.																				.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Sequence		S	W	E	Y	Y	A	S	V	Y	T	E	.	.	.	.	.	.	.	.	.	.	.	.	R	F	M	G	L	P	T	K	D	D	N	L	E	H	Y	K	N	S	T	V	M	A	R	.	.	.	.	A	E	Y	F	R	N	V	D	Y	L	L	I	H	G	T	A	D	D	N	V	H	F	Q	N	S	A	Q	I	A	K
Template Known Secondary structure			T	T	T	S	B						.	.	.	.	.	.	.	.	.	.	.	.						S	S	T	T	T	T							T		S	G	G	G	.	.	.	.	G	G	G	G	T	T	S								T	T		S	S	S		T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template SS confidence
		652	.	.	.	.	.	.	.	660	.	.													.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.					.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.				.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		L	I	T	S	S	S	A	D	G	K	L	L	E	I	P	F	N	P	V	.	.	.	Y	R	N	F	D	K	G	L	Q	E	I	T	D	W	I	E	K	R	L
Query Conservation																					.	.	.
Alig confidence																					.	.	.
Template Conservation
Template Sequence		A	L	V	N	A	Q	V	D	F	Q	A	M	W	Y	S	D	Q	N	H	G	L	S	G	L	S	T	N	H	L	Y	T	H	M	T	H	F	L	K	Q	C	F
Template Known Secondary structure						T	T									T	T			T	T			T
Template Predicted Secondary structure
Template SS confidence
		716	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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