Job Description P04335 Confidence 99.94% Date Thu Jan 5 10:58:13 GMT 2012 Rank 35 Aligned Residues 233 % Identity 15% Template c1yr2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:prolyl oligopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity Resolution 1.80 Å

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		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.								.	.	.
Predicted Secondary structure																									.										.																																					.	.	.	.	.	.	.
Query SS confidence																									.										.																																					.	.	.	.	.	.	.
Query Sequence		M	R	Q	M	E	F	T	V	P	G	G	A	P	I	T	G	F	L	H	M	P	K	G	.	D	G	P	F	P	T	V	L	M	.	C	G	G	L	D	A	M	Q	T	D	Y	Y	S	L	Y	E	R	Y	F	A	P	R	G	I	A	M	L	T	I	D	M	P	S	V	G	F	.	.	.	.	.	.	.	S	S	K
Query Conservation																									.										.																																					.	.	.	.	.	.	.
Alig confidence																									.										.																																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	Q	V	F	Y	P	S	K	D	G	T	K	V	P	M	F	I	V	R	R	K	D	A	K	G	P	L	P	T	L	L	Y	G	Y	G	G	F	N	V	A	L	T	P	W	F	S	A	G	F	M	T	W	I	D	S	G	G	A	F	A	L	A	N	L	R	G	G	G	E	Y	G	D	A	W	H	D	A	G	R
Template Known Secondary structure										T	T	S											T	T			S												T	T																T	T	T									T	T	S	S	T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	L	T	Q	D	S	S	L	L	H	Q	H	V	L	K	A	L	P	N	V	P	W	V	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R	L	A	Y	L	E	S	P	R	L	K	A	V	A	C	L	G	P	V	V	H	T	L	L	S	D	F	K	C	Q	Q	Q	V	P	E	M	Y	L
Query Conservation
Alig confidence																																																																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		R	D	K	K	Q	N	V	F	D	D	F	I	A	A	G	E	W	L	I	A	N	G	V	T	P	R	H	G	L	A	I	E	G	G	S	N	G	G	L	L	I	G	A	V	T	N	Q	R	P	D	L	F	A	A	A	S	P	A	V	G	V	M	D	M	L	R	F	D	Q	F	T	A	G	R	Y	W	.	.	.	.
Template Known Secondary structure		G	G	G	T																	T	T	S	S		T	T								T														G	G	G		S						S					T	T	S	G	G	G	S	T	T	G	G	G	G	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.					.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																								.	.																			.	.	.	.
Query SS confidence																																								.	.																			.	.	.	.
Query Sequence		D	V	L	A	S	R	L	G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	T	.	.	P	M	L	S	G	Y	W	K	N	D	P	F	S	P	E	E	D	S	.	.	.	.	R	L	I	T	S	S	S	A	D	G	K	L	L	E	I	P	F	N
Query Conservation																																								.	.																			.	.	.	.
Alig confidence		.	.	.								.																		.	.	.	.							.	.																			.	.	.	.
Template Conservation		.	.	.								.																		.	.	.	.
Template Sequence		.	.	.	V	D	D	Y	G	Y	P	.	E	K	E	A	D	W	R	V	L	R	R	Y	S	P	Y	H	N	.	.	.	.	V	R	S	G	V	D	Y	P	A	I	L	V	T	T	A	D	T	D	D	R	V	V	P	G	H	S	F	K	Y	T	A	A	L	Q	T	A	A	I	G	P	K	P	H	L	I	R	I	E
Template Known Secondary structure		.	.	.							T	.	T	S									T	T		G	G	G		.	.	.	.			T	T	S											S			S	S	S		T													S				S	S
Template Predicted Secondary structure		.	.	.								.																		.	.	.	.
Template SS confidence
					617	.	.	620	.	.	.		.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640					.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	Y	R	N	F	D	K	G	L	Q	E	I	T	D	W	I	E	K	R	L
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		P	I	D	.	K	Q	I	E	E	T	A	D	V	Q	A	F	L	A	H	F	T
Template Known Secondary structure					.
Template Predicted Secondary structure					.
Template SS confidence
		698	.	700		.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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