Job Description P04335 Confidence 99.95% Date Thu Jan 5 10:58:13 GMT 2012 Rank 26 Aligned Residues 229 % Identity 15% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.																					.	.	.	.																											.	.
Query SS confidence																											.	.	.																					.	.	.	.																											.	.
Query Sequence		G	T	M	R	Q	M	E	F	T	V	P	G	G	A	P	I	T	G	F	L	H	M	P	K	G	.	.	.	D	G	P	F	P	T	V	L	M	C	G	G	L	D	A	M	Q	T	D	Y	.	.	.	.	Y	S	L	Y	E	R	Y	F	A	P	R	G	I	A	M	L	T	I	D	M	P	S	V	G	F	S	.	.
Query Conservation																											.	.	.																					.	.	.	.																											.	.
Alig confidence												.															.	.	.																					.	.	.	.																											.	.
Template Conservation												.
Template Sequence		P	K	V	E	Y	R	D	I	E	I	.	D	D	Y	N	L	P	M	Q	I	L	K	P	A	T	F	T	D	T	T	H	Y	P	L	L	L	V	V	D	G	T	P	G	S	Q	S	V	A	E	K	F	E	V	S	W	E	T	V	M	V	S	S	H	G	A	V	V	V	K	C	D	G	R	G	S	G	F	Q	G	T
Template Known Secondary structure			B			B						.	T	T						B			B		S	S			S	S	S												T	T											S								T	T										T	T		S	S	S
Template Predicted Secondary structure												.
Template SS confidence
		592	.	.	.	.	.	.	.	600	.		.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
							237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																		.	.	.	.
Query SS confidence		.	.	.	.	.																																																		.	.	.	.
Query Sequence		.	.	.	.	.	S	K	W	K	L	T	Q	D	S	S	L	L	H	Q	H	V	L	K	A	L	P	N	V	P	W	V	D	H	T	R	V	A	A	F	G	F	R	F	G	A	N	V	A	V	R	L	A	Y	L	.	.	.	.	E	S	P	R	L	K	A	V	A	C	L	G	P	V	V	H	T	L	L	S	D	F
Query Conservation		.	.	.	.	.																																																		.	.	.	.
Alig confidence		.	.	.	.	.																																																		.	.	.	.
Template Conservation
Template Sequence		K	L	L	H	E	V	R	R	R	L	G	L	L	E	E	K	D	Q	M	E	A	V	R	T	M	L	K	E	Q	Y	I	D	R	T	R	V	A	V	F	G	K	D	Y	G	G	Y	L	S	T	Y	I	L	P	A	K	G	E	N	Q	G	Q	T	F	T	C	G	S	A	L	S	P	I	T	D	F	K	L	Y	A	S
Template Known Secondary structure						T	T	T	T		T	T	T															S	S	S	S												T													S	S	S	T	T					S						S					T	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																																		.																												.	.	.	.
Query SS confidence																																																		.																												.	.	.	.
Query Sequence		K	C	Q	Q	Q	V	P	E	M	Y	L	D	V	L	A	S	R	L	G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L	G	R	R	C	P	.	T	P	M	L	S	G	Y	W	K	N	D	P	F	S	P	E	E	D	S	R	L	I	T	S	S	S	A	.	.	.	.
Query Conservation																																																		.																												.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.																	.																												.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Sequence		A	F	S	E	R	Y	.	.	.	.	.	.	.	.	.	.	.	L	G	L	H	G	L	D	N	.	.	.	.	.	.	.	R	A	Y	E	M	T	K	V	A	H	R	V	S	A	L	E	E	Q	Q	F	L	I	I	H	P	T	A	D	E	K	I	H	F	Q	H	T	A	E	L	I	T	Q	L	I	R	G	K	A
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.					S	S			.	.	.	.	.	.	.	S	S	T	T	T	S		T					T	S			S									T	T		S	S	S															T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template SS confidence
		751	.	.	.	.	.												.	.	.	760	.	.	.	.								.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		D	G	K	L	L	E	I	P	F	N	P	V	Y	R	N	.	.	.	.	F	D	K	G	L	Q	E	I	T	D	W	I	E	K	R	L
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.
Template Conservation
Template Sequence		N	Y	S	L	Q	I	Y	P	D	E	S	H	Y	F	T	S	S	S	L	K	Q	H	L	Y	R	S	I	I	N	F	F	V	E	C	F
Template Known Secondary structure									T	T			S	S																			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		813	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions