Job Description P04335 Confidence 99.66% Date Thu Jan 5 10:58:13 GMT 2012 Rank 193 Aligned Residues 210 % Identity 13% Template c1pjaA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:palmitoyl-protein thioesterase 2 precursor; PDBTitle: the crystal structure of palmitoyl protein thioesterase-2 reveals the2 basis for divergent substrate specificities of the two lysosomal3 thioesterases (ppt1 and ppt2) Resolution 2.70 Å

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		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		F	P	T	V	L	M	C	G	G	L	D	A	M	Q	T	D	Y	Y	S	L	Y	E	R	Y	F	A	P	R	.	.	G	I	A	M	L	T	I	D	M	P	S	V	G	F	S	S	K	W	K	L	T	Q	D	S	S	L	L	H	Q	H	V	L	K	A	L	P	N	V	P	W	V	D	H	T	R	V	A	A	F	G
Query Conservation																														.	.
Alig confidence																		.												.	.																		.	.	.	.	.
Template Conservation																		.																															.	.	.	.	.
Template Sequence		Y	K	P	V	I	V	V	H	G	L	F	D	S	S	Y	S	.	F	R	H	L	L	E	Y	I	N	E	T	H	P	G	T	V	V	T	V	L	D	L	F	D	G	R	E	S	L	R	.	.	.	.	.	P	L	W	E	Q	V	Q	G	F	R	E	A	V	V	P	I	M	A	K	A	P	Q	G	V	H	L	I	C
Template Known Secondary structure											T	T			G	G	G	.	G											S	T	T								S	S		S	G	G	G	G	S	.	.	.	.	.																					T	T
Template Predicted Secondary structure																		.																															.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		F	R	F	G	A	N	V	A	V	R	L	A	Y	L	E	S	P	.	R	L	K	A	V	A	C	L	G	P	V	V	H	T	L	L	S	D	F	K	C	Q	Q	Q	V	P	E	M	Y	L	D	V	L	A	S	R	L	G	M	H	D	A	S	D	E	A	L	R	V	E	L	N	R	Y	S	L	K	V	Q	G	L	L
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		Y	S	Q	G	G	L	V	C	R	A	L	L	S	V	M	D	D	H	N	V	D	S	F	I	S	L	S	S	P	Q	M	G	Q	Y	G	D	T	D	Y	L	K	W	L	F	P	T	S	M	R	S	N	L	Y	R	I	C	Y	S	P	W	G	Q	E	F	S	I	C	N	Y	W	H	D	P	H	H	D	D	L	Y	L
Template Known Secondary structure			T														T	T										S			T	T		B		S										T	T											T	S	T	T	G	G	G	S	T	G	G	G	G	B			T	T
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		351	.																																										.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.										380
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Query Sequence		G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	C	P	T	P	M	L	S	G	Y	W	K	N	D	P	F	S	P	E	E	D	S	R	L	I	T	S	.	.	.	.	.	.	.	.	.	S
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	S	S	F	L	A	L	I	N	G	E	R	D	H	P	N	A	T	V	W	R	K	N	F	L	R	V	G	H	L	V	L	I	G	G	P	D	D	G	V	I	T	P	W	Q	S	S	F	F	G	F	Y	D	A	N	E	T	V	L	E	M	E	E	Q	L	V	Y	L	R	D	S	F	G	L	K	T	L	L	A
Template Known Secondary structure					S	S					T	T	S	S			T	T									T	T		S								T	T		S	S	S	S	S	G	G	G	G	G	T					T	T						G	G	G	S					T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.				.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		S	A	D	G	K	L	L	E	I	P	F	N	P	V	.	.	.	Y	R	N	F	D	K	G	L	Q	E	I	T	D	W	I
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence		R	G	A	I	V	R	C	P	M	A	G	I	S	H	T	A	W	H	S	N	R	T	L	Y	E	T	C	I	E	P	W	L
Template Known Secondary structure		T	T								S	S			T	T	T	T	T	S									T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions