Return to main results Retrieve Phyre Job Id

Job DescriptionP04335
Confidence99.87%DateThu Jan 5 10:58:13 GMT 2012
Rank80Aligned Residues236
% Identity19%Templatec1lnsA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:x-prolyl dipeptidyl aminopetidase; PDBTitle: crystal structure analysis of the x-prolyl dipeptidyl2 aminopeptidase from lactococcus lactis
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   177..180 .........190.........200.........210...
Predicted Secondary structure 


..











.........................................
Query SS confidence 



. .
































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  GGAP. . ITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation   
  ..
 
 
 

    
 
 

   
           .........................................
Alig confidence 



..
































.........................................
Template Conservation 

  


 


 

    
 


   


 

          
 
                                   
Template Sequence  RGENDLIKIQIIRPKSTEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDKA
Template Known Secondary structure  SSS




SS

SSTT














S


















SS
Template Predicted Secondary structure 

































































Template SS confidence 















































































   182.......190.........200.........210.........220.........230.........240.........250.........260.
 
   214.....220.........230.........240....... ..250....... ..260.....
Predicted Secondary structure  ...........


















.................






Query SS confidence  . . . . . . . . . . .

































. .









. . . . . . . . . . . . . . .







Query Sequence  . . . . . . . . . . . YERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSL. . LHQHVLKALP. . . . . . . . . . . . . . . NVPWVDHT
Query Conservation  ...........    

 

 


  
 

 
 
       
   ..    


 
 ...............    

  
Alig confidence  ...........

































..









...............





.
Template Conservation                


 





 

 



 
 
        
  
  






    
          

 


.
Template Sequence  PYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWAN. G
Template Known Secondary structure  S
B






TTT


TTSTTS
S


TTSTTSS
SSTT




TT.
Template Predicted Secondary structure 






















































.
Template SS confidence 















































































   262.......270.........280.........290.........300.........310.........320.........330......... 340
 
   266...270.........280.........290.........300........ .310.........320.........330.........340
Predicted Secondary structure 













.....





Query SS confidence 










































. . . . .































Query Sequence  RVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFK. . . . . CQQQVPEMYLDVLASRLGMHDASDEALRVELN
Query Conservation 

 
 
 
 

  
   
   
 

 


  
           .....     
      
    
              
Alig confidence 










































.....































Template Conservation 



 
 

 
 

  


  

 





    

 

     
     
         

     
     
      
Template Sequence  KVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNA
Template Known Secondary structure  TTTT
TTS

SBBSSSSB


TT
TT


GGGGS
Template Predicted Secondary structure 



































Template SS confidence 















































































   341........350.........360.........370.........380.........390.........400.........410.........420
 
   341 ........350.........360.........370.........380.... .....390......
Predicted Secondary structure  ......................



















..







Query SS confidence 
. . . . . . . . . . . . . . . . . . . . . .










































. .











Query Sequence  R. . . . . . . . . . . . . . . . . . . . . . YSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADG. . KLLEIPFNPVYR
Query Conservation   ...................... 

     

  
  




 
  
 


 
    

 
    ..


 
       
Alig confidence 
......................










































..











Template Conservation                     

 

  

    
  
 



 
 

 
  
           
     
 





 
  
Template Sequence  EYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPEGHAKHAFLHRGAHIY
Template Known Secondary structure 
TTT



TTBGGGGGGG

STT

SS
TS
TT

S
SS

Template Predicted Secondary structure 










































Template SS confidence 















































































   421........430.........440.........450.........460.........470.........480.........490.........500
 
   397.. 400.........410...
Predicted Secondary structure 
....
Query SS confidence 


. . . .













Query Sequence  NFD. . . . KGLQEITDWIEKRL
Query Conservation     ....     
 


   
Alig confidence 


....













Template Conservation         
       


  
Template Sequence  MNSWQSIDFSETINAYFVAKL
Template Known Secondary structure 
TTBSS

Template Predicted Secondary structure 







Template SS confidence 




















   501........510.........520.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions