 |
Job Description | P39338 | Confidence | 4.26% | Date | Thu Jan 5 11:59:30 GMT 2012 |
Rank | 51 | Aligned Residues | 91 |
% Identity | 19% | Template | d1bccc2 |
SCOP info | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
| a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
| a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
|
Resolution | 3.16 |
|
 |
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | A | D | M | P | L | V | G | C | V | L | T | L | L | L | L | V | L | L | I | F | M | A | A | K | G | L | R | H | Q | A | L | M | T | S | L | N | G | V | R | F | S | F | N | C | S | M | K | G | F | W | W | V | T | F | F | L | P | I | L | M | A | I | G | M | G | T | V | F | F | I | S | T | K | M | L | P | A | N | S |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |
|
|   |   |   |   |
|
|   |
|   |   |
|
|   |
|
|
|
|
|   |
|   |
|
|   |   |   |
|
|   |   |   |
|   |   |
|
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|
|   |   |   |   |
|
|   |
|
|   |   |   |
|   |
|   |   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|
|   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |
|
|
|
| . | . | . | . | . | . | . | . |
|   |   |
|
Template Sequence |   |
N | K | L | G | G | V | L | A | L | A | A | S | V | L | I | L | F | L | I | P | F | L | H | K | S | K | Q | R | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
M | T | F | R | P | L | S | Q | T | L | F | W | L | L | V | A | N | L | L | I | L | T | W | I | . |
. |
. |
. |
. |
. |
. |
. |
G | S | Q | P |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | T | G | G | G | S |
|
|
| S | S | S | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  | S |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
287 | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
340 | . | . | . |
  |
  |   |
173 | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | |
. | . | . | . | . | . | . | 200 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | S | S | V | I | I | S | M | V | L | M | A | I | V | G | I | V | S | I | G | . |
I | F | N | G | T | L | Y | S | L | V | M | S | F | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|
|
| . |
|   |   |
|   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |   |   |   |
|
|
|   |
|   |   |
|
|   |   |
|
|
|   |   |
|
|   |   |   |   |
|   |   |
|
|
Template Sequence |   |
V | E | H | P | F | I | I | I | G | Q | M | A | S | L | S | Y | F | T | I | L | L | I | L | F | P | T | I | G | T | L | E | N | K | M | L |
Template Known Secondary structure |   |
S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
344 | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|