Job Description P39306 Confidence 11.09% Date Thu Jan 5 11:59:10 GMT 2012 Rank 23 Aligned Residues 112 % Identity 9% Template c7mdhA_ PDB info PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form Resolution 2.40 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.										.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.
Query Sequence		I	K	P	S	G	V	A	Y	E	T	M	K	A	A	D	M	V	V	V	D	M	S	G	K	V	V	E	G	E	Y	R	P	S	S	D	T	A	T	H	L	E	L	Y	R	.	.	.	.	.	.	.	.	.	R	Y	P	S	L	G	G	I	V	H	T	H	S	T	H	A	T	A	W	A	Q	A	G	L	A	I	P
Query Conservation																																														.	.	.	.	.	.	.	.	.
Alig confidence																					.																									.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																					.																																																										.	.	.
Template Sequence		V	S	I	G	I	D	P	Y	E	V	F	E	D	V	D	W	A	L	L	.	I	G	A	K	P	R	G	P	G	M	E	R	A	A	L	L	D	I	N	G	Q	I	F	A	D	Q	G	K	A	L	N	A	V	A	S	K	N	V	K	V	L	V	V	G	N	P	C	N	T	N	A	L	I	C	L	K	N	.	.	.
Template Known Secondary structure						S						T	T	T		S					.								T	T																									S		T	T							S	S	S											T	.	.	.
Template Predicted Secondary structure																					.																																																										.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	G	T	T	H	A	D	Y	F	F	G	D	I	P	C	T	R	G	L	S	E	E	E	V	Q	G	E	Y	E	L	N	T	G	K	V	I	I	E	T	L	G	N	A	E	P	L	H	T	P	G	I	V	V	Y	Q	H	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	D	I	P	A	K	N	F	H	A	L	T	R	L	D	E	N	R	A	K	C	Q	L	A	L	K	A	G	V	F	Y	D	K	V	S	N	V	T	I	W	G	N	H	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S		G	G	G																				T	T	S		G	G	G								B		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions