Return to main results Retrieve Phyre Job Id

Job DescriptionP39306
Confidence100.00%DateThu Jan 5 11:59:10 GMT 2012
Rank10Aligned Residues168
% Identity20%Templatec3m4rA_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:uncharacterized protein; PDBTitle: structure of the n-terminal class ii aldolase domain of a conserved2 protein from thermoplasma acidophilum
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30...... ...40.........50.........60.........
Predicted Secondary structure 












.......















.........
Query SS confidence 






























. . . . . . .
































. . . . . . . . .
Query Sequence  QQVFEANMELPRYGLVTFTWGNVSAIDRERG. . . . . . . LVVIKPSGVAYETMKAADMVVVDMSGKVVEGEY. . . . . . . . .
Query Conservation    
  
 
 
   

     



 
  
  .......   




     
   

  

  
    
  .........
Alig confidence 






























.......
































.........
Template Conservation   
 
  
 


    
  







    
        
 

 

     
  

 
 

 

    
           
Template Sequence  DEVVYGSRLIGSDPDLVLGGGNTSVKTTERDHAGRIISVLRVKNSGSNLGTIDSRGFTGIRXDDALAAAKIDKXTDEAXV
Template Known Secondary structure  T
TTT





TTS
BTTS
GGG

GGGGGG
S


Template Predicted Secondary structure 










































Template SS confidence 















































































   15....20.........30.........40.........50.........60.........70.........80.........90....
 
   70.........80.........90.........100.........110.........120.........130......
Predicted Secondary structure  .............






























Query SS confidence  . . . . . . . . . . . . .


































































Query Sequence  . . . . . . . . . . . . . RPSSDTATHLELYRRYPSLGGIVHTHSTHATAWAQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQ
Query Conservation  ............. 

 
  

  


  


 



 
     
 
                    
            
Alig confidence  .............












.....




















.....


















....
Template Conservation               


 
  

    .....  





     
 
     .....        
 
  


  
....
Template Sequence  DYLKKSXVNPSEPSPSVETFLHAFLP. . . . . YKFVXHSHADAILSITNTDLP. . . . . SDQIAKILGNVVVLPYIPP. . . .
Template Known Secondary structure  TBSSTTS

B
TTTS
.....SS

TSS

.....
S



S....
Template Predicted Secondary structure 













.....








.....








....
Template SS confidence 















































































   96...100.........110.........120. ........130.........140.. .......150.........160.
 
   137..140.........150.........160.........170.........180.........190....
Predicted Secondary structure 














Query SS confidence 

























































Query Sequence  GEYELNTGKVIIETLGNAEPLHTPGIVVYQHGPFAWGKDAHDAVHNAVVMEEVAKMAW
Query Conservation                
         



 


    
 
   
      

  
    
Alig confidence  .......


















































Template Conservation  .......

  
            



 




  
 
  

  
   
 
 
   
Template Sequence  . . . . . . . GFTLAKEVXNCFKKGIDGIVLRKHGLLTFGDTGKEAYDRHINIVSRAENFI
Template Known Secondary structure  .......S

TT
STTTSS
Template Predicted Secondary structure  .......










Template SS confidence 

























































   162.......170.........180.........190.........200.........210..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions