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Job DescriptionP37751
Confidence100.00%DateThu Jan 5 11:57:28 GMT 2012
Rank2Aligned Residues355
% Identity13%Templatec3oy2A_
PDB info PDB header:viral protein,transferaseChain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a
Resolution2.31 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  SIVVVSAVNFTTGGPFTILKKFLAATNNKENVSFIALVHSAKELKESYPWVKFIEFPEVKGSWLKRLHFEYVVCKKLSKE
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Template Sequence  KLIIVGAHSSVPSGYGRVMRAIVPRISK. . AHEVIVFGIHAFGRSVHANIEEFDAQTAEHVRGLNEQGFYYSGLSEFIDV
Template Known Secondary structure 
TT

STT..TSS

S

S
SSSTT

STT

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   2.......10.........20......... 30.........40.........50.........60.........70.........
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  LNATHWICLHDITANVVTKKRYVYCHNPAPFYKGILFREILMEPSFFLFKMLYGLIYKINIKKNTAVFVQQFWMKEKFIK
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Template Sequence  HKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWI. . . . . . . . . FSHPKVVGVMAMSKCWISDICN
Template Known Secondary structure 

S
GGG

S




SBS

GGGGGG.........GG
TTSST
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   80.........90.........100.........110.........120........ .130.........140.........150
 
   164.....170.........180.........190.........200.........210.........220.........230 .........240
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Query Sequence  KYSINNIIVSRPEIKLSDKSQLTDDDSQFKNNPSELTIFYPAVPRVFKNYELIISAARKLKEQSNIK. . . FLLTISGTEN
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Template Sequence  YGCKVPINIVSHFVDTKTIYD. ARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESK
Template Known Secondary structure  TT

S










TT.TT
GGGTTS

S
SSGGGT
TT



TT
S
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   151........160.........170. ........180.........190.........200.........210.........220.........
 
   241........250... ......260.........270.........280.........290.........300.........
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Query Sequence  AYAKYIISLAEGL. . . . . . . . . . . DNVHFLGYLDKEKIDHCYNISDIVCFPSRLETWGLPLSEAKERGKWVLASDFPFTR
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Template Sequence  FDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGAD
Template Known Secondary structure 

T
S
TT
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S

S

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   230.........240.........250.........260.........270.........280.........290.........300.........
 
   310.........320.... .....330.........340.........350 .........360.......
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Query Sequence  ETLGSYEKKAFFDSN. . . . . . . . . . . . . . . . . NDDMLVKLIIDFKKGNLKKDISDANF. . . . . IYRNENVLVGFDELVNF
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Template Sequence  DYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAFTFFKDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNS
Template Known Secondary structure  S
TTTS



TTT
SS



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   310.........320.........330.........340.........350.........360.........370.........380.........
 
   368.370
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Query Sequence  ITE
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Template Conservation 


Template Sequence  LLR
Template Known Secondary structure  T
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   390..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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