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Job DescriptionP37751
Confidence100.00%DateThu Jan 5 11:57:28 GMT 2012
Rank18Aligned Residues371
% Identity12%Templatec3nb0A_
PDB info PDB header:transferaseChain: A: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase
Resolution2.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MGKSIVV. VS. AVNFTTGGPFTILKK. FLAATNNKENVSFIALVHSAKELKES. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTME
Template Known Secondary structure  TTTTS
SSGGG

TTT

SSSGGGS
STT
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   51........60........ .70.........80.... ....
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Query Sequence  . . . . . . . . . . . . YPWVKFIEFPEVKGSWLK. . . . . . . . . . . . . . . . . . . . . . . . RLHFEYVVCKKLSKEL. . . . . . NATH
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Template Sequence  SRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIV
Template Known Secondary structure  TTT

SSTT


SGGGGGG




SS


S
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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   8990.........100.........110....... ..120.........130........ .140.........150
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Query Sequence  WICLHDITANVVTKKRYVYCHNPAPFYKG. . . . . . . . . . . ILFREILMEPSFFLFKMLYGL. . . . . . . IYKINIKKNTAV
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Template Sequence  AHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVF
Template Known Secondary structure  SGGG
TTT
S
SS
TSSS
S
GGG

TT
SS
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   165....170.........180.........190.........200.........210.........220.........230.........240....
 
   151........160.........170.........180.........190. ........200........ .
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Query Sequence  FVQQFWMKEKFIKKYSINNIIVSRPEIKLSDKSQLTDDDSQ. . . . . . . . . . . . . . . . . . . . FKNNPSELTIFYPAVPR. V
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Template Sequence  TTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYK
Template Known Secondary structure  SSTSS

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B




SSTTTTT


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GGGSS

TT
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   245....250.........260.........270.........280.........290.........300.........310.........320....
 
   210.........220........ .230.......
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Query Sequence  FKNYELIISAARKLKEQSN. . . . . . . . IKFLLTISG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNG
Template Known Secondary structure  TTTTT







TTSTT
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   325....330.........340.........350.........360.........370.........380.........390.........400....
 
   238.240.........250.. .......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TENAYAKYIISLAEG. . . . . . . . . . . . . LDNVHFL
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Template Conservation      
       
                     
    
  
     
 

       
      




  
  
   
Template Sequence  LTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNAN
Template Known Secondary structure 

SSS







TT



SBSTTGGG
T



TT
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TT
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   405....410.........420.........430.........440.........450.........460.........470.........480....
 
   260.........270.........280.........290.........300.........310.... .....320.....
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Query Sequence  GYLDKEKIDHCYNISDIVCFPSRLETWGLPLSEAKERGKWVLASDFPFTRETLGS. . . . . . . YEKKAFFDSNN. . . . . . .
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Template Sequence  NPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDES
Template Known Secondary structure 
SSS



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SSBSS
TT

TTBTTS
TT

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   485....490.........500.........510.........520.........530.........540.........550.........560....
 
   326...330......... 340.........350.........360.........370.
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Query Sequence  DDMLVKLIIDFKKG. . . . . . NLKKDISDANFIYRNENVLVGFDELVNFITEE
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Template Conservation     

  
              
           
      
   
  

 
Template Sequence  VEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLALRR
Template Known Secondary structure  T

GGGGGB
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   565....570.........580.........590.........600.........610......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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