Phyre 2 alignment of P37751 with c3l7mC

Job Description P37751
Confidence 98.42% Date Thu Jan 5 11:57:28 GMT 2012

Rank 45 Aligned Residues 339

% Identity 9% Template c3l7mC_

PDB info PDB header:structural protein Chain: C: PDB Molecule:teichoic acid biosynthesis protein f; PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a

Resolution 2.85 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	K	S	I	V	V	V	S	A	V	N	F	T	T	G	G	P	F	T	I	L	K	K	F	L	A	A	T	N	N	K	E	N	V	S	F	I	A	L	V	H	S	A	K	E	L	K	E	S	Y	P	W	V	K	F	I	E	F	P	E	V	K	G	S	W	L	K	R	L	H	F	E	Y	V	V	C	K	K	L	S
Query Conservation
Alig confidence									.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	P	K	T	I	V	F	E	.	.	S	F	G	G	K	N	Y	S	D	S	P	K	Y	I	Y	E	Y	M	Q	K	Y	Y	P	N	Y	R	Y	I	W	S	F	K	N	P	D	K	N	V	V	P	G	S	A	E	K	V	K	R	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	Y	Y	Q
Template Known Secondary structure									.	.	B	G	G	G	T	B	S																T	T	S							S	S	G	G	G					S	S						T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	351	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.																.	410	.	.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	E	L	N	A	T	H	W	I	C	L	H	D	I	T	A	N	V	V	T	K	K	R	Y	V	Y	C	H	N	P	A	P	F	Y	K	G	I	L	F	R	E	I	L	M	E	P	S	F	F	L	F	K	M	L	Y	G	L	I	Y	K	I	N	I	K	K	N	T	A	V	F	V	Q	Q	F	W	M	K	E	K	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	Y	S	E	A	S	H	W	V	S	N	A	R	T	P	L	Y	L	N	K	K	E	N	Q	T	Y	I	Q	T	W	H	G	T	P	L	K	R	L	A	N	D	M	K	V	V	R	M	P	G	T	T	T	P	K	Y	K	R	N	F	N	R	E	T	S	R	W	D	Y	L	I	S	P	N	R	Y	S	T	E	I	F
Template Known Secondary structure											S	S				T	T	S				T	T	S							S				S	B			G	G	G							T	T															T	T		S					S	S
Template Predicted Secondary structure
Template SS confidence
	414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.

	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.									.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.										.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query Sequence	I	K	K	Y	S	I	N	N	I	I	V	S	R	P	E	I	K	L	S	D	.	.	.	.	.	.	.	.	K	S	Q	L	T	D	D	D	S	Q	F	K	N	N	P	S	E	L	T	I	F	Y	P	A	V	P	R	V	F	K	N	.	.	.	.	.	.	.	.	.	Y	E	L	I	I	S	A	A	R	K	L	K
Query Conservation																					.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	S	A	F	W	M	D	E	E	R	I	L	E	I	G	Y	P	R	N	D	V	L	V	N	R	A	N	D	Q	E	Y	L	D	E	I	R	T	H	L	N	L	P	S	D	K	K	V	I	M	Y	A	P	T	W	R	D	D	E	F	V	S	K	G	K	Y	L	F	E	L	K	I	D	L	D	N	L	Y	K	E	L
Template Known Secondary structure				T	T			G	G	G				S			G	G	G						S	T	T												T	T			S	S												G	G	G			G	G	G	S	S					T	T
Template Predicted Secondary structure
Template SS confidence
	494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.

	225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	Q	S	N	I	K	F	L	L	T	I	S	G	T	E	N	A	Y	A	K	Y	I	I	S	L	A	E	G	L	D	N	V	H	F	L	G	Y	L	D	K	E	K	I	D	H	C	Y	N	I	S	D	I	V	C	F	P	S	R	L	E	T	W	G	L	P	L	S	E	A	K	E	R	G	K	W	V	L	A	S	D
Query Conservation
Alig confidence												.	.	.	.	.																					.	.																	.	.	.	.	.
Template Conservation												.	.	.	.	.																					.	.																	.	.	.	.	.
Template Sequence	G	D	D	Y	V	I	L	L	R	M	A	.	.	.	.	.	Y	L	I	S	N	A	L	D	L	S	G	Y	E	N	F	A	I	D	V	S	.	.	N	Y	N	D	V	S	E	L	F	L	I	S	D	C	L	I	.	.	.	.	.	T	D	Y	S	S	V	M	F	D	Y	G	I	L	K	R	P	Q	F	F	F	A
Template Known Secondary structure	T	T	T									.	.	.	.	.					T	T				T	T		T	T	T					T	.	.	T		S								T		S				.	.	.	.	.		S	S		T	T					G	G	G	T
Template Predicted Secondary structure												.	.	.	.	.																					.	.																	.	.	.	.	.
Template SS confidence
	574	.	.	.	.	.	580	.	.	.	.						.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.			.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620						.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.

	305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.										.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																																				.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.																																				.	.
Query Sequence	F	P	F	T	R	E	T	L	G	S	Y	E	K	K	A	F	F	D	S	.	.	.	.	.	.	.	.	.	N	N	D	D	M	L	V	K	L	I	I	D	F	K	K	G	N	L	K	K	D	I	S	D	A	N	F	I	Y	R	N	E	N	V	L	.	.	V	G	F	D	E	L	V	N	F	I	T	E	E
Query Conservation																				.	.	.	.	.	.	.	.	.																																				.	.
Alig confidence				.	.															.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation				.	.
Template Sequence	Y	D	I	.	.	D	K	Y	D	K	G	L	R	G	F	Y	M	N	Y	M	E	D	L	P	G	P	I	Y	T	E	P	Y	G	L	A	K	E	L	K	N	L	D	K	V	Q	Q	Q	Y	Q	E	K	I	D	A	F	Y	D	R	F	C	S	V	D	N	G	K	A	S	Q	Y	I	G	D	L	I	H	K	D
Template Known Secondary structure	T	T	T	.	.	T	T	T	T	T	T			S	B	S	S		T	T	T	S	S	S	S				S	S	S																													T	T	T			S
Template Predicted Secondary structure				.	.
Template SS confidence
	642	.	.			.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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