Job Description P37751 Confidence 41.81% Date Thu Jan 5 11:57:28 GMT 2012 Rank 72 Aligned Residues 88 % Identity 10% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	L	I	I	S	A	A	R	K	L	K	E	Q	S	N	I	K	F	L	L	T	I	S	G	T	E	N	A	Y	A	K	Y	I	I	S	L	A	E	G	L	D	N	V	H	F	L	G	Y	L	D	K	E	K	I	D	H	C	Y	N	I	S	D	I	V	C	F	P	S	R	L	E	T	W	G	L	P	L	S	E
Query Conservation
Alig confidence																		.																																																										.
Template Conservation																		.																																																										.
Template Sequence		L	L	L	A	A	R	A	I	V	A	I	E	N	P	A	D	.	V	S	V	I	S	S	R	N	T	G	Q	R	A	V	L	K	F	A	A	A	T	G	A	T	P	I	A	G	R	F	T	P	G	F	T	N	Q	I	Q	A	A	F	R	E	P	R	L	L	V	V	T	D	P	R	A	D	H	.	Q	P	L	T	E
Template Known Secondary structure												S	S		G	G	G	.							S																					S	S								T	T		S	S					S					S		T	T	T	T		.
Template Predicted Secondary structure																		.																																																										.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.
		293	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	R	G	K	W	V	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	Y	V	N	L	P	T	I	A
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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