Job Description P37751 Confidence 99.96% Date Thu Jan 5 11:57:28 GMT 2012 Rank 26 Aligned Residues 323 % Identity 13% Template c2xcuC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Resolution 2.42 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	S	I	V	V	V	S	A	V	N	F	T	T	G	G	P	F	T	I	L	K	K	F	L	A	A	T	N	N	K	E	N	V	S	F	I	A	L	V	H	S	A	K	E	L	K	E	S	Y	P	W	V	K	F	I	E	F	P	E	V	K	G	S	W	L	K	R	L	H	F	E	Y	V	V	C	K	K	L	S
Query Conservation
Alig confidence														.	.	.																																																					.	.	.	.	.	.	.	.
Template Conservation														.	.	.																																																					.	.	.	.	.	.	.	.
Template Sequence		C	K	G	A	L	W	V	H	T	A	S	I	.	.	.	G	E	F	N	T	F	L	P	I	L	K	E	L	K	R	E	H	R	I	L	L	T	Y	F	S	P	R	A	R	E	Y	L	K	T	K	S	D	F	Y	D	C	L	H	P	L	P	L	D	N	P	F	S	.	.	.	.	.	.	.	.	V	K	R	F	E
Template Known Secondary structure		G	T	T							S	S		.	.	.														T	T	T	S							S		T	T							T	T	G	G	G		S								S	S				.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.																																																					.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.									.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	L	N	A	T	H	W	I	C	L	H	D	I	T	A	N	V	V	T	K	K	R	Y	V	Y	C	H	N	P	A	P	F	Y	K	G	I	L	F	R	E	I	L	M	E	P	S	F	F	L	F	K	M	L	Y	G	L	I	Y	K	I	N	I	K	K	N	T	A	V	F	V	Q	Q	F	W	M	K	E	K	F
Query Conservation
Alig confidence																						.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	S	K	P	K	A	L	I	V	V	E	R	E	F	W	P	S	L	I	.	.	.	.	I	F	T	K	V	P	K	I	L	V	N	A	Y	A	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	I	E	K	I	L	S	K	K	F	D	L	I	I	M	R	T	Q	E	D	V	E	K	F
Template Known Secondary structure							S						S									.	.	.	.					S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								G	G	G		S					S	S
Template Predicted Secondary structure																						.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		I	K	K	Y	S	I	N	N	I	I	V	S	R	P	E	I	K	L	S	D	K	S	Q	L	T	D	D	D	S	Q	F	K	N	N	P	S	E	L	T	I	F	Y	P	A	V	P	R	V	F	K	N	Y	E	L	I	I	S	A	A	R	K	L	K	E	Q	S	N	I	K	F	L	L	T	I	S	G	T	E	N	.
Query Conservation																																																																																	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	T	F	G	A	K	R	V	F	S	C	G	N	L	K	F	I	C	Q	K	G	K	G	I	K	L	K	G	.	.	.	.	.	.	.	.	.	.	.	E	F	I	V	A	G	S	I	H	T	G	E	V	E	I	I	L	K	A	F	K	E	I	K	K	T	Y	S	S	L	K	L	I	L	V	P	R	H	I	E	N
Template Known Secondary structure			T	T	T		S	S							G	G	G											S	S	.	.	.	.	.	.	.	.	.	.	.										G	G	G													T	T		T	T								S	S	G	G	G
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.												.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
			241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.							.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.
Predicted Secondary structure		.																	.	.	.	.	.	.																					.																													.
Query SS confidence		.																	.	.	.	.	.	.																					.																													.
Query Sequence		.	A	Y	A	K	Y	I	I	S	L	A	E	G	L	D	N	V	.	.	.	.	.	.	H	F	L	G	Y	L	D	K	E	K	I	D	H	C	Y	N	I	S	D	I	.	V	C	F	P	S	R	L	E	T	W	G	L	P	L	S	E	A	K	E	R	G	K	W	V	L	A	S	D	.	F	P	F	T	R	E	T
Query Conservation		.																	.	.	.	.	.	.																					.																													.
Alig confidence		.																	.	.	.	.	.	.																					.																													.
Template Conservation
Template Sequence		A	K	I	F	E	K	K	A	R	D	F	G	F	K	T	S	F	F	E	N	L	E	G	D	V	I	L	V	D	R	F	G	I	L	K	E	L	Y	P	V	G	K	I	A	I	V	G	G	T	F	V	N	I	G	G	H	N	L	L	E	P	T	C	W	G	I	P	V	I	Y	G	P	Y	T	H	K	V	N	D	L
Template Known Secondary structure												T	T						T	T				S	S							T	T						G	G	G								S	S	S	S	T	T											T	T							S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		312	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		L	G	S	.	Y	E	K	K	A	F	F	D	S	N	N	D	D	M	L	V	K	L	I	I	D	F	K	K	G	N	L	K	K	D	I	S	D	A	N	F	I	Y	R	N	E	N	V	L	V	G	F	D	E	L	V	N
Query Conservation					.
Alig confidence					.																																							.
Template Conservation																																												.
Template Sequence		K	E	F	L	E	K	E	G	A	G	F	E	V	K	N	E	T	E	L	V	T	K	L	T	E	L	L	S	V	K	K	E	I	K	V	E	E	K	S	R	E	I	.	K	G	C	Y	L	E	K	L	R	E	F	L	R
Template Known Secondary structure								T	T							S														S														.
Template Predicted Secondary structure																																												.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions