Job Description P37751 Confidence 22.51% Date Thu Jan 5 11:57:28 GMT 2012 Rank 96 Aligned Residues 350 % Identity 12% Template c1y6gB_ PDB info PDB header:transferase/dna Chain: B: PDB Molecule:dna alpha-glucosyltransferase; PDBTitle: alpha-glucosyltransferase in complex with udp and a 13_mer2 dna containing a hmu base at 2.8 a resolution Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	S	I	V	V	V	S	A	V	N	F	T	T	G	G	P	F	T	I	L	K	K	F	L	A	A	T	N	N	K	E	N	V	S	F	I	A	L	V	H	S	A	K	E	L	K	E	S	Y	P	W	V	K	F	I	E	F	P	E	V	K	G	S	W	L	K	R	L	H	F	E	Y	V	V	C	K	K	L	S
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.
Template Sequence		S	M	R	I	C	I	F	M	A	R	G	L	E	G	C	G	V	T	K	F	S	L	E	Q	R	D	W	F	I	K	N	G	H	E	V	T	L	V	Y	A	K	D	K	S	F	T	R	T	S	S	H	D	H	K	S	F	S	I	P	V	I	.	.	.	.	.	.	.	L	A	K	E	Y	D	K	A	L	K	L	V
Template Known Secondary structure										T	T				S	S																T	T									T	T	S			T	T	S	S	S	S			T	T	T						.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.
Template SS confidence
		1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060								.	.	.	.	.	.	.	.	.	1070	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		K	E	L	N	A	T	H	W	I	C	L	H	D	I	T	A	.	.	.	.	.	.	N	V	V	T	K	K	R	Y	V	Y	C	H	N	P	A	P	F	Y	K	G	I	L	F	R	E	I	L	M	E	P	S	F	F	L	F	K	M	L	Y	G	L	I	Y	K	I	N	I	K	K	N	T	A	V	F	V	Q	Q	F
Query Conservation																		.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		N	D	C	D	I	L	I	I	N	S	V	P	A	T	S	V	Q	E	A	T	I	N	N	Y	K	K	L	L	D	N	I	K	P	S	I	R	V	V	V	Y	Q	H	D	H	S	V	L	S	L	R	R	N	L	G	.	.	.	.	.	.	.	.	.	.	L	E	E	T	V	R	R	A	D	V	I	F	S	H	S	D
Template Known Secondary structure		T	S	S	S									B	T	T	S														S	S		S	S	S										S					T	T	B	S	S	.	.	.	.	.	.	.	.	.	.									S					S		T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1073	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.											.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.
					156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	W	M	K	E	K	F	I	K	K	Y	S	I	N	N	I	I	V	S	R	P	E	I	K	L	S	D	K	S	Q	L	T	D	D	D	S	Q	F	K	N	N	P	S	E	L	T	I	F	Y	P	A	V	P	R	V	F	K	N	Y	E	L	I	I	S	A	A	R	K	L	K	E	Q	S	N	I	K	F	L
Query Conservation		.	.	.
Alig confidence		.	.	.															.	.
Template Conservation																			.	.
Template Sequence		N	G	D	F	N	K	V	L	M	K	E	W	Y	P	E	A	P	.	.	T	V	Y	N	F	Q	P	P	M	D	I	V	K	V	R	S	T	Y	W	K	D	V	S	E	I	N	M	N	I	N	R	W	I	G	R	T	T	T	W	K	G	F	Y	Q	M	F	D	F	H	E	K	F	L	K	P	A	G	K	S	T	V
Template Known Secondary structure		T	S	T	T	T	T	T						S					.	.									B													G	G	G												S	S	G	G	G												T	T	G	G	G	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		1143	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.			1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220
		233	.	.														.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.							.	.	.	.	.	.	.	290	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.																												.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.																												.	.	.	.	.	.
Query Sequence		L	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	T	E	N	A	Y	A	K	Y	I	I	S	L	A	E	G	L	D	N	.	.	V	H	F	L	G	Y	L	D	K	E	K	I	D	H	C	Y	N	I	S	D	I	V	C	F	P	S	R	.	.	.	.	.	.	L	E	T	W	G	L	P	L	S
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.																												.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.																												.	.	.	.	.	.
Template Conservation
Template Sequence		M	E	G	L	E	R	S	P	A	F	I	A	I	K	E	K	G	I	P	Y	E	Y	Y	G	N	R	E	I	D	K	M	N	L	A	P	N	Q	P	A	Q	I	L	D	C	Y	I	N	S	E	M	L	E	R	M	S	K	S	G	F	G	Y	Q	L	S	K	L	N	Q	K	Y	L	Q	R	S	L	E	Y	T	H	L
Template Known Secondary structure									T							T	T	T								T	T	S	G	G	G				S	S	S							S													T												G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		1231	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.									.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.				340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																		.	.	.	.	.	.	.	.																																	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.																																	.	.	.
Query Sequence		E	A	K	E	R	G	K	W	V	L	A	S	D	F	P	F	.	.	.	.	.	.	.	.	T	R	E	T	L	G	S	Y	E	K	K	A	F	F	D	S	N	N	D	D	M	L	V	K	L	I	I	D	F	K	K	G	.	.	.	N	L	K	K	D	I	S	D	A	N	F	I	Y	R	N	E	N	V	L	V	G
Query Conservation																		.	.	.	.	.	.	.	.																																	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation
Template Sequence		E	L	G	A	C	G	T	I	P	V	F	W	K	S	T	G	E	N	L	K	F	R	V	D	N	T	P	L	T	S	H	D	S	G	I	I	W	F	D	E	N	D	M	E	S	T	F	E	R	I	K	E	L	S	S	D	R	A	L	Y	D	R	E	R	E	K	A	Y	E	F	L	Y	Q	H	Q	D	S	S	F	C
Template Known Secondary structure						T	T	S					B								B		S	S	S			B	S	S	S	S							B		S	S	S													S																					B
Template Predicted Secondary structure
Template SS confidence
		1311	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390
		361	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	E	L	V	N	F	I	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	E	Q	F	D	I	I	T	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1391	.	.	.	.	.	.	.	.	1400

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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