 |
Job Description | P0A9I8 | Confidence | 99.52% | Date | Thu Jan 5 11:10:25 GMT 2012 |
Rank | 41 | Aligned Residues | 95 |
% Identity | 16% | Template | c2fynO_ |
PDB info |
PDB header:oxidoreductase | Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur |
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
|
Resolution | 3.20 Å |
|
 |
  |   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | I | D | D | I | L | P | E | T | G | V | C | A | L | L | G | D | E | Q | V | A | I | F | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | Y | H | S | D | Q | V | F | A | I | S | N | I | D | P | F | F |
Query Conservation |   |
  |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |
|   |
|   |   |   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
Template Sequence |   |
D | V | S | S | V | E | P | G | V | Q | L | T | V | K | F | L | G | K | P | I | F | I | R | R | R | T | E | A | D | I | E | L | G | R | S | V | Q | L | G | Q | L | V | D | T | N | A | R | N | A | N | I | D | A | G | A | E | A | T | D | Q | N | R | T | L | D | E | A | G | E | W | L | V | M | W | G | V | C | T | H | L |
Template Known Secondary structure |   |
 |
| S | S |
|
| T | T |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  | T | S |
| G | G | G |
| S |
|
| B |
|
| B | S | S | S |
| T | T |
| B |
|
| G | G | G | S | S | S | S | S | S | S |
|  |  |  |  |  |
|
|
| T | T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
53 | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . |
  |
  |   |
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | S | S | V | L | S | R | G | L | I | A | E | H | Q | G | E | L | W | V | A | S | P | L | K | K | Q | R | F | R | L | S | D | G | L | C | M | E | D | E | Q | . |
F | S | V | K | H | Y | E | A | R | V | K | D | G | V | V | Q | L | R | G |
Query Conservation |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|   |   |
|
|   |   |
|
|   |   |   |   |   |   |   | . |   |   |
|   |   |
|   |
|   |
|   |   |
|   |
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |   | . | . | . | . |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|   |
|
|   | . |   |
|   |
|
|   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
Template Sequence |   |
G | C | S | P | I | G | . |
. |
. |
. |
G | V | S | G | D | F | G | G | W | F | C | P | C | H | G | S | H | Y | D | S | . |
A | G | R | I | R | K | G | P | A | P | E | N | L | P | I | P | L | A | K | F | I | D | E | T | T | I | Q | L | G |
Template Known Secondary structure |   |
|
|
|
|  |  | . | . | . | . |  |  |  | T | T | T |  |  |  |  |  | T | T | T | T |  |  |  |  | T | . | T |
|
|  |  |  | S | S |
|
| S |
|
|
| B |
| S |
|
|  |  |  | T | T |  |  |
|
|
|
Template Predicted Secondary structure |   |
|
|  |  |
|
| . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |
|
| . |
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
133 | . | . | . | . | . | |
|
|
|
. | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | |
. | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|