Return to main results Retrieve Phyre Job Id

Job DescriptionP17952
Confidence99.65%DateThu Jan 5 11:36:25 GMT 2012
Rank31Aligned Residues134
% Identity15%Templated1o5za1
SCOP infoMurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain Folylpolyglutamate synthetase, C-terminal domain
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   326...330.........340.........350.........360.........370.........380.........390.........400.....
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  RRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLL
Query Conservation   
 
 
                
 

 



 

 
 
  
        

 
               
   
   
 

Alig confidence 





..........




















































...







Template Conservation 

 
 
..........      



 



 

  
   
        
  
 
   


    
  
...      
 
Template Sequence  GRFEIL. . . . . . . . . . EKNGKMYILDGAHNPHGAESLVRSLKLYFNGEPLSLVIGILDDKNREDILRKY. . . TGIFERVI
Template Known Secondary structure 

S..........TT



S
TT




TTS
GGG...TTT
S
Template Predicted Secondary structure 

..........



















...

Template SS confidence 















































































   294..... 300.........310.........320.........330.........340.........350.. .......360
 
   406...410.........420.........430.........440.........450.........460.........470.........480.....
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  MLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTP
Query Conservation 
            
     
   
            
  


      
  




  



       
 
   
    
Alig confidence 







.....














.













......







..




















Template Conservation         
.....      
        .           

 ......     


.. 






     
   
  
Template Sequence  VTRVPSPR. . . . . MKDMNSLVDMAKKFF. KNVEVIEDPLEAIE. . . . . . STERATVV. . TGSLFLVGYVREFLTTGKINE
Template Known Secondary structure 


SSTT.....



.S


SS......T

S..S
SS

G
Template Predicted Secondary structure 





.....




.



......



..







Template SS confidence 















































































   361....... .370.........380... ......390....... ..400..... ....410.........420......
 
   486
Predicted Secondary structure 
Query SS confidence 
Query Sequence  E
Query Conservation 
Alig confidence 
Template Conservation 
Template Sequence  E
Template Known Secondary structure  G
Template Predicted Secondary structure 
Template SS confidence 
   427
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions